BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC32ZA12RM1.SCF screened BAC_end
         (1006 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1245                                                        1213   0.0  

>3x_Contig1245 
          Length = 6017

 Score = 1213 bits (612), Expect = 0.0
 Identities = 675/690 (97%), Gaps = 6/690 (0%)
 Strand = Plus / Minus

                                                                        
Query: 47   ttaaagttttttttggggcaa-gcaccgcttttgggggcaatccgtttgagttaatgtcc 105
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 4455 ttaaagttttttttggggcaaagcaccgcttttgggggcaatccgtttgagttaatgtcc 4396

                                                                        
Query: 106  gggtaagatatttgaaaaatataggatttcattcaggtgagtaaaaccacacacatgcat 165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4395 gggtaagatatttgaaaaatataggatttcattcaggtgagtaaaaccacacacatgcat 4336

                                                                        
Query: 166  attgattcattcagccataaaagctctgttccacagtttgagcaacactttggtgtgaaa 225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4335 attgattcattcagccataaaagctctgttccacagtttgagcaacactttggtgtgaaa 4276

                                                                        
Query: 226  tacggaacgaaggaggcagtgagcatttctcgtaacaaaccatggttaaaagggcgatct 285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4275 tacggaacgaaggaggcagtgagcatttctcgtaacaaaccatggttaaaagggcgatct 4216

                                                                        
Query: 286  ccaaaaccgtgttcattgaaattgaagtcgggcatggaatttctaacagttaatacatca 345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4215 ccaaaaccgtgttcattgaaattgaagtcgggcatggaatttctaacagttaatacatca 4156

                                                                        
Query: 346  catcctctgaatgatgaagatgtcaaaaagtttgagaaatttgttggaacggtactgtcg 405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4155 catcctctgaatgatgaagatgtcaaaaagtttgagaaatttgttggaacggtactgtcg 4096

                                                                        
Query: 406  agcggggtcagggcgttttatatgaaagggaatggtgggaaactaccggatgaacgctgt 465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4095 agcggggtcagggcgttttatatgaaagggaatggtgggaaactaccggatgaacgctgt 4036

                                                                        
Query: 466  atgtatgtatcgagtgatggtcgtgagttcgatataaagaatttccttccaatctcatat 525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4035 atgtatgtatcgagtgatggtcgtgagttcgatataaagaatttccttccaatctcatat 3976

                                                                        
Query: 526  ccacgatttgatggggatatgacagtagagcaagcgtatgaaatcttggtagataataag 585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3975 ccacgatttgatggggatatgacagtagagcaagcgtatgaaatcttggtagaaaataag 3916

                                                                        
Query: 586  tatttggttcctagagactatatccccatcgtaattgatggagggggggtttnctttctg 645
            |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 3915 tatttggttcctagagactatatccccatcgtaattgatgga-ggggggtttcctttctg 3857

                                                                        
Query: 646  tttgagataaagcagtgaagacgttttcttttgctaatatagaaattcggtgagttgatc 705
            ||||||| || ||||||||||||||||| ||||||||||||| ||| |||||||||||||
Sbjct: 3856 tttgagaaaaggcagtgaagacgttttc-tttgctaatatag-aatccggtgagttgatc 3799

                                          
Query: 706  cttatttggagaagattctggaaacatttg 735
             | |||  ||||||  ||||||||||||||
Sbjct: 3798 ttcatt--gagaaggatctggaaacatttg 3771


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7928
Number of Sequences: 1807
Number of extensions: 7928
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 1006
length of database: 10,358,551
effective HSP length: 16
effective length of query: 990
effective length of database: 10,329,639
effective search space: 10226342610
effective search space used: 10226342610
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)