BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC32ZA12RM1.SCF screened BAC_end (1006 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1245 1213 0.0 >3x_Contig1245 Length = 6017 Score = 1213 bits (612), Expect = 0.0 Identities = 675/690 (97%), Gaps = 6/690 (0%) Strand = Plus / Minus Query: 47 ttaaagttttttttggggcaa-gcaccgcttttgggggcaatccgtttgagttaatgtcc 105 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 4455 ttaaagttttttttggggcaaagcaccgcttttgggggcaatccgtttgagttaatgtcc 4396 Query: 106 gggtaagatatttgaaaaatataggatttcattcaggtgagtaaaaccacacacatgcat 165 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4395 gggtaagatatttgaaaaatataggatttcattcaggtgagtaaaaccacacacatgcat 4336 Query: 166 attgattcattcagccataaaagctctgttccacagtttgagcaacactttggtgtgaaa 225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4335 attgattcattcagccataaaagctctgttccacagtttgagcaacactttggtgtgaaa 4276 Query: 226 tacggaacgaaggaggcagtgagcatttctcgtaacaaaccatggttaaaagggcgatct 285 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4275 tacggaacgaaggaggcagtgagcatttctcgtaacaaaccatggttaaaagggcgatct 4216 Query: 286 ccaaaaccgtgttcattgaaattgaagtcgggcatggaatttctaacagttaatacatca 345 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4215 ccaaaaccgtgttcattgaaattgaagtcgggcatggaatttctaacagttaatacatca 4156 Query: 346 catcctctgaatgatgaagatgtcaaaaagtttgagaaatttgttggaacggtactgtcg 405 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4155 catcctctgaatgatgaagatgtcaaaaagtttgagaaatttgttggaacggtactgtcg 4096 Query: 406 agcggggtcagggcgttttatatgaaagggaatggtgggaaactaccggatgaacgctgt 465 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4095 agcggggtcagggcgttttatatgaaagggaatggtgggaaactaccggatgaacgctgt 4036 Query: 466 atgtatgtatcgagtgatggtcgtgagttcgatataaagaatttccttccaatctcatat 525 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4035 atgtatgtatcgagtgatggtcgtgagttcgatataaagaatttccttccaatctcatat 3976 Query: 526 ccacgatttgatggggatatgacagtagagcaagcgtatgaaatcttggtagataataag 585 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 3975 ccacgatttgatggggatatgacagtagagcaagcgtatgaaatcttggtagaaaataag 3916 Query: 586 tatttggttcctagagactatatccccatcgtaattgatggagggggggtttnctttctg 645 |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| Sbjct: 3915 tatttggttcctagagactatatccccatcgtaattgatgga-ggggggtttcctttctg 3857 Query: 646 tttgagataaagcagtgaagacgttttcttttgctaatatagaaattcggtgagttgatc 705 ||||||| || ||||||||||||||||| ||||||||||||| ||| ||||||||||||| Sbjct: 3856 tttgagaaaaggcagtgaagacgttttc-tttgctaatatag-aatccggtgagttgatc 3799 Query: 706 cttatttggagaagattctggaaacatttg 735 | ||| |||||| |||||||||||||| Sbjct: 3798 ttcatt--gagaaggatctggaaacatttg 3771 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7928 Number of Sequences: 1807 Number of extensions: 7928 Number of successful extensions: 59 Number of sequences better than 1.0e-20: 1 length of query: 1006 length of database: 10,358,551 effective HSP length: 16 effective length of query: 990 effective length of database: 10,329,639 effective search space: 10226342610 effective search space used: 10226342610 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)