BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZB02RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig310 1457 0.0
>3x_Contig310
Length = 1261
Score = 1457 bits (735), Expect = 0.0
Identities = 813/833 (97%), Gaps = 6/833 (0%)
Strand = Plus / Plus
Query: 83 aaccaaataattgttctttggtagttgtgtgagtgtttatggagagaaagcactaaaata 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaccaaataattgttctttggtagttgtgtgagtgtttatggagagaaagcactaaaata 60
Query: 143 ccagcaagaacagtttgcaattgacctgttgaattactctagatgctctccatttatact 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccagcaagaacagtttgcaattgacctgttgaattactctagatgctctccatttatact 120
Query: 203 cttcacaggtagtcctattaggaccccagtaagaatataccgacattagcaaaaacttct 262
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cttcacaggtagtccgattaggaccccagtaagaatataccgacattagcaaaaacttct 180
Query: 263 ataagctgccaaagaaagtggaagaaagttcttaatgccacgattccaccccctataacc 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ataagctgccaaagaaagtggaagaaagttcttaatgccacgattccaccccctataacc 240
Query: 323 ccatatcacctgagaaattggctccattaacttccaaaagtatcccttaaaacctagtgt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccatatcacctgagaaattggctccattaacttccaaaagtatcccttaaaacctagtgt 300
Query: 383 cgctatattcctcatccactagctcatcaattacaaccttattctgacattagtgttccg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cgctatattcctcatccactagctcatcaattacaaccttattctgacattagtgttccg 360
Query: 443 acatattatccaggggccgggtaatagaaaattctacgtgagtccagaaatttctattac 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acatattatccaggggccgggtaatagaaaattctacgtgagtccagaaatttctattac 420
Query: 503 cgaagacaaacactatctacaggtgaagacacgcctcatcgcaagaatacaagtttgtac 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cgaagacaaacactatctacaggtgaagacacgcctcatcgcaagaatacaagtttgtac 480
Query: 563 catggatgaataatcagggttgcgttctttggctaatattaacgcagcggataagatggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 catggatgaataatcagggttgcgttctttggctaatattaacgcagcggataagatggg 540
Query: 623 ctgttcggtaatttttttgaacaatggcattac-atcagtaagtaaaaccgtatgcgtta 681
|||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||
Sbjct: 541 ctgttcggtaatttttttgaacaa-ggcattacaatcagtaggtaaaaccgtatgcgtta 599
Query: 682 aattctctcactagctgntatgtaattcanagaaattaccgncgtattatccacggttaa 741
||||||||||||||||| ||||||||||| |||| |||||| |||||||||||||| |||
Sbjct: 600 aattctctcactagctgttatgtaattcaaagaatttaccgccgtattatccacgg-taa 658
Query: 742 tggggccattnnatatga-tattatgattattagntaatatttagggacactgaccgagt 800
||| |||||| | |||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 659 tggtgccattata-atgattattatgattattagttaatatttagggacactgaccgagt 717
Query: 801 ctggctagtagcagtaatgtacaaaaaatcgctgtggtctacaccataaaagtcttgctt 860
||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct: 718 ctggctagtagcagtaatgtacaaagaatcgctgtggtctaca-cagtaaagtcttgctt 776
Query: 861 atgcgtgattttgagttttttaactcatatttcacaaatcaatgtgaaaggaa 913
||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 777 atgcgtgattttgagttttttaactcatatttcacaaatcagtgtgaaaggaa 829
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5436
Number of Sequences: 1807
Number of extensions: 5436
Number of successful extensions: 24
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)