BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZB03FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig661 999 0.0
3x_Contig1648 402 e-112
3x_Contig540 159 1e-38
3x_Contig1709 155 2e-37
3x_Contig1088 151 3e-36
3x_Contig1769 149 1e-35
3x_Contig1787 147 5e-35
3x_Contig1464 135 2e-31
3x_Contig1605 127 4e-29
3x_Contig1803 119 1e-26
>3x_Contig661
Length = 2026
Score = 999 bits (504), Expect = 0.0
Identities = 578/592 (97%), Gaps = 8/592 (1%)
Strand = Plus / Minus
Query: 87 ttcgctgtcacacgagttgttattcttcttggaataactaaacaacagactgcttcgata 146
||||||||||||||||||||| ||| ||||||| | |||||||||||||||||||||||
Sbjct: 599 ttcgctgtcacacgagttgtttttcgtcttggattttctaaacaacagactgcttcgata 540
Query: 147 tctgtattccctatcaaa-cacttcgtaagtacttcctccaaatatctctctctcgggat 205
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 539 tctgtattccctatcaaaacact-cgtaagtacttcctccaaatatctctctctcgggat 481
Query: 206 ctaagtctgattatgggttaacatttttatcctcttttaaactctgtttaggagcactac 265
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ctaagtctgagtatgggttaacatttttatcctcttttaaactctgtttaggagcactac 421
Query: 266 catcactaacgatatcgagtctttgtatatcttcacagatacctctt-gtcggat-catt 323
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 420 catcactaacgatatcgagtctttgtatatcttcacagatacctctttgtcggattcatt 361
Query: 324 acttccttgcggagactcagtgacgctgccat-gtaggtgatcctggttgtcgcagtcac 382
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 360 acttccttgcggagactcagtgacgctgccattgtaggtgatcctggttgtcgcagtcac 301
Query: 383 agtcacgtgtaatt-aattcaaaaccttcggtatcagatgaatccatagtgtttactagc 441
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 300 agtcacgtgtaatttaattcaaaac-ttcggtatcagatgaatccatagtgtttactagc 242
Query: 442 tatatatagctagtgtgttgatgcacctggcgatctgtcatgactgtgttgatggtcttt 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tatatatagctagtgtgttgatgcacctggcgatctgtcatgactgtgttgatggtcttt 182
Query: 502 ccccagatctatggcctctttatataataactcagattgg-ttaatgatgtttcatgttg 560
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 181 ccccagatctatggcctctttatataataactcagattggtttaatgatgtttcatgttg 122
Query: 561 atacttgaccgtctattgtttctaatccgtctcaacagataacccgccgaatgatctaaa 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atacttgaccgtctattgtttctaatccgtctcaacagataacccgccgaatgatctaaa 62
Query: 621 aaatctgtaaaatttgtaatagatttcgtgcctccttagcttagtggtagag 672
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaatctgtaaaatttgtaatagatttcgtgcctccttagcttagtggtagag 10
>3x_Contig1648
Length = 16375
Score = 402 bits (203), Expect = e-112
Identities = 266/283 (93%), Gaps = 3/283 (1%)
Strand = Plus / Plus
Query: 649 tgcctccttagcttagtggtagagcgttgcacttgtaatgcataggtcgctagttcaatt 708
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 6160 tgcctccttagcttagtggtagagcgttgcacttgtaatgcaaaggtcgctagttcaatt 6219
Query: 709 ctggcaggtggcattcatctttttcaatat-caatctgacctttctcgaatctatttttt 767
||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 6220 ctggcaggtggcatttatctttttcaatatccaatctgaccttcctcgaatctatttttt 6279
Query: 768 ttttcttaaagtaacattgtgcact-aaactagcattacggtacgtct-ataccatgtat 825
||||||||||||||||||||||||| ||||||||| |||||||||||| | |||||||||
Sbjct: 6280 ttttcttaaagtaacattgtgcactaaaactagcaatacggtacgtctaaaaccatgtat 6339
Query: 826 tccctatattactacatatcgggataattacagttccagcacttgagttggactggcctt 885
|||||||||||||||||||||||||| | |||||||||||||||||||||||| | |||
Sbjct: 6340 tccctatattactacatatcgggatagtaccagttccagcacttgagttggacttggctt 6399
Query: 886 tagtccataagaactctatgtatctgactatctaactgattat 928
||||||| | |||||||||||||||||||||||||||||||
Sbjct: 6400 tagtccagtatgactctatgtatctgactatctaactgattat 6442
>3x_Contig540
Length = 1644
Score = 159 bits (80), Expect = 1e-38
Identities = 156/178 (87%), Gaps = 5/178 (2%)
Strand = Plus / Plus
Query: 382 cagtcacgtgtaattaattcaaaaccttcggtatcagatgaatccatagtgtttactagc 441
||||||||||| ||| ||||| | ||| |||||| ||||||||||||||||||| ||||
Sbjct: 1119 cagtcacgtgttgttatttcaagatctttggtatctgatgaatccatagtgtttattagc 1178
Query: 442 tatatat--agctagtg--tgttgatgcacctggcgatctgtcatgactgtgttgatggt 497
||||||| || ||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1179 tatatatctag-tagtgaatgttgatgcacctggcgatctggcatgactgtgttgatggt 1237
Query: 498 ctttccccagatctatggcctctttatataataactcagattggttaatgatgtttca 555
| || |||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 1238 ccttgttcagatctaatgcctccttatataataattcagattggttaatgatgtttca 1295
>3x_Contig1709
Length = 16948
Score = 155 bits (78), Expect = 2e-37
Identities = 154/177 (87%), Gaps = 3/177 (1%)
Strand = Plus / Minus
Query: 382 cagtcacgtgtaattaattcaaaaccttcggtatcagatgaatccatagtgtttactagc 441
||||||||||| |||| | |||| ||| |||||| | ||||||||||||||||| ||||
Sbjct: 12761 cagtcacgtgttgttaaattaaaatctttggtatctggtgaatccatagtgtttattagc 12702
Query: 442 tatatat--agcta-gtgtgttgatgcacctggcgatctgtcatgactgtgttgatggtc 498
||||||| || | || ||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 12701 tatatatctagtaatgtatgttgatgcacctggtgatctgtcatgactgtgttgatcgtc 12642
Query: 499 tttccccagatctatggcctctttatataataactcagattggttaatgatgtttca 555
||| ||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 12641 tttgtccagatctaatacctccttatataataactcagattggttaatgatgtttca 12585
>3x_Contig1088
Length = 4585
Score = 151 bits (76), Expect = 3e-36
Identities = 155/178 (87%), Gaps = 5/178 (2%)
Strand = Plus / Plus
Query: 382 cagtcacgtgtaattaattcaaaaccttcggtatcagatgaatccatagtgtttactagc 441
||||||||||| || ||||| | ||| |||||| ||||||||||||||||||| ||||
Sbjct: 1128 cagtcacgtgttgttgtttcaagatctttggtatctgatgaatccatagtgtttattagc 1187
Query: 442 tatatat--agctagtgt--gttgatgcacctggcgatctgtcatgactgtgttgatggt 497
||||||| || |||||| ||||||||||||||||||||| |||||| |||||||||||
Sbjct: 1188 tatatatctag-tagtgtatgttgatgcacctggcgatctggcatgaccgtgttgatggt 1246
Query: 498 ctttccccagatctatggcctctttatataataactcagattggttaatgatgtttca 555
| || |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1247 ccttgttcagatctaatgcctccttatataataactcagattggttaatgatgtttca 1304
>3x_Contig1769
Length = 25795
Score = 149 bits (75), Expect = 1e-35
Identities = 133/149 (89%), Gaps = 5/149 (3%)
Strand = Plus / Minus
Query: 411 ggtatcagatgaatccatagtgtttactagctatatat--agctagtgt--gttgatgca 466
|||||| |||||||||||| | |||| ||||||||||| || |||||| |||||||||
Sbjct: 24414 ggtatctgatgaatccatattctttattagctatatatctag-tagtgtatgttgatgca 24356
Query: 467 cctggcgatctgtcatgactgtgttgatggtctttccccagatctatggcctctttatat 526
||| |||||||||||||||||||||||| |||||| ||||||||| ||||| ||||||
Sbjct: 24355 cctagcgatctgtcatgactgtgttgatcgtctttgtccagatctaatgcctccttatat 24296
Query: 527 aataactcagattggttaatgatgtttca 555
|||||||||||||||||||||||||||||
Sbjct: 24295 aataactcagattggttaatgatgtttca 24267
>3x_Contig1787
Length = 34189
Score = 147 bits (74), Expect = 5e-35
Identities = 153/177 (86%), Gaps = 3/177 (1%)
Strand = Plus / Plus
Query: 382 cagtcacgtgtaattaattcaaaaccttcggtatcagatgaatccatagtgtttactagc 441
||||||||||| |||| | || | ||| |||||| ||| ||||||||||||||| ||||
Sbjct: 14224 cagtcacgtgttgttaaattaagatctttggtatctgataaatccatagtgtttattagc 14283
Query: 442 tatatat--agcta-gtgtgttgatgcacctggcgatctgtcatgactgtgttgatggtc 498
||||||| || | || |||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 14284 tatatatctagtaatgtatgttgatgcacctggcgatctggcatgactgtgttgattgtc 14343
Query: 499 tttccccagatctatggcctctttatataataactcagattggttaatgatgtttca 555
|| ||| |||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 14344 cttacccggatctaatgcctccttatataataactcagattggttaatgatgtttca 14400
>3x_Contig1464
Length = 11693
Score = 135 bits (68), Expect = 2e-31
Identities = 153/178 (85%), Gaps = 5/178 (2%)
Strand = Plus / Minus
Query: 382 cagtcacgtgtaattaattcaaaaccttcggtatcagatgaatccatagtgtttactagc 441
||||||||||| || ||||| | ||| |||||| ||||||||||||||||||| ||||
Sbjct: 5557 cagtcacgtgttgttgtttcaagatctttggtatctgatgaatccatagtgtttattagc 5498
Query: 442 tatatat--agctagtgt--gttgatgcacctggcgatctgtcatgactgtgttgatggt 497
||||||| || |||||| ||||||| ||||||||||||| ||||||||||| ||||||
Sbjct: 5497 tatatatctag-tagtgtatgttgatgtacctggcgatctggcatgactgtgtcgatggt 5439
Query: 498 ctttccccagatctatggcctctttatataataactcagattggttaatgatgtttca 555
| || |||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 5438 ccttgttcagatctaatgcctccttatataataattcagattggttaatgatgtttca 5381
>3x_Contig1605
Length = 12373
Score = 127 bits (64), Expect = 4e-29
Identities = 152/178 (85%), Gaps = 5/178 (2%)
Strand = Plus / Minus
Query: 382 cagtcacgtgtaattaattcaaaaccttcggtatcagatgaatccatagtgtttactagc 441
||||||||||| |||| | || | ||| |||||| ||||||||||||| ||||| ||||
Sbjct: 315 cagtcacgtgttgttaaattaagatctttggtatctgatgaatccatagcgtttattagc 256
Query: 442 tatatat--agctagtgt--gttgatgcacctggcgatctgtcatgactgtgttgatggt 497
||||||| || |||||| ||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 255 tatatatctag-tagtgtatgttgatgcacctggcgatctggcatgactgtgttgatcgt 197
Query: 498 ctttccccagatctatggcctctttatataataactcagattggttaatgatgtttca 555
| || |||||| | ||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 196 ccttgtacagatccaatgcctccttatataataactcagattggttgatgatgtttca 139
>3x_Contig1803
Length = 52241
Score = 119 bits (60), Expect = 1e-26
Identities = 130/150 (86%), Gaps = 5/150 (3%)
Strand = Plus / Plus
Query: 411 ggtatcagatgaatccatagtgtttactagctatatat--agctagtgt--gttgatgca 466
|||||| ||||||||||||| ||||| ||||||||||| || |||||| |||||||||
Sbjct: 34931 ggtatctgatgaatccatagcgtttattagctatatatccag-tagtgtatgttgatgca 34989
Query: 467 cctggcgatctgtcatgactgtgttgatggtctttccccagatctatggcctctttatat 526
||||| |||||| ||||||||| ||||||||| || ||||||||| ||||| ||||||
Sbjct: 34990 cctggggatctggcatgactgtattgatggtccttgtccagatctaatgcctccttatat 35049
Query: 527 aataactcagattggttaatgatgtttcat 556
||||| ||||||| ||||||||| ||||||
Sbjct: 35050 aataattcagattagttaatgatatttcat 35079
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7245
Number of Sequences: 1807
Number of extensions: 7245
Number of successful extensions: 88
Number of sequences better than 1.0e-20: 10
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)