BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZB03RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1624 1255 0.0
>3x_Contig1624
Length = 12551
Score = 1255 bits (633), Expect = 0.0
Identities = 768/796 (96%), Gaps = 15/796 (1%)
Strand = Plus / Plus
Query: 44 cttttgtgatcgttcgcttaaagcctactttttctctatcgtcactgagacagacgcagc 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11731 cttttgtgatcgttcgcttaaagcctactttttctctatcgtcactgagacagacgcagc 11790
Query: 104 aaaaacttcttacttctaagataaagaagaatacctcactacagatgcttcaactgtcgg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11791 aaaaacttcttacttctaagataaagaagaatacctcactacagatgcttcaactgtcgg 11850
Query: 164 gagaagtagcacaaaagaaattttaaatgtctacaaagaacctctacgttgatttatggc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11851 gagaagtagcacaaaagaaattttaaatgtctacaaagaacctctacgttgatttatggc 11910
Query: 224 ttcatagcagacgcccctccccttcacagaatctaatgaggattccctcagtcaccgaac 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11911 ttcatagcagacgcccctccccttcacagaatctaatgaggattccctcagtcaccgaac 11970
Query: 284 gttgtcgtcattctgtaataataaccaaaagaaaaatgtaaccacaagcatggagtaccc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11971 gttgtcgtcattctgtaataataaccaaaagaaaaatgtaaccacaagcatggagtaccc 12030
Query: 344 aaaggaatactgcaatggagtatgcgcagtgatgccctatccccccaatccgctcagttg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12031 aaaggaatactgcaatggagtatgcgcagtgatgccctatccccccaatccgctcagttg 12090
Query: 404 ctcatatagtcagttgatgcttctttgtcagaaaggtagcaccaaattacaaagcgatga 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12091 ctcatatagtcagttgatgcttctttgtcagaaaggtagcaccaaattacaaagcgatga 12150
Query: 464 gcttttgtgaaaagtccatcggtttatttacatttttcctaaaacgtaaatatgcatagt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12151 gcttttgtgaaaagtccatcggtttatttacatttttcctaaaacgtaaatatgcatagt 12210
Query: 524 tgtttacctttttccttattangaagtgttcgatcaatatagatatcaggccgtagcatg 583
||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||
Sbjct: 12211 tgtttacctttttccttattaggaagtgttcgatcaataaagaaatcaggccgtagcatg 12270
Query: 584 agtgcaaacacatgacctggctctggccctattcctggcactgggctg-ttttct-ccta 641
|||||||||||| ||||||||||||||||||||||||||||| ||||| |||||| ||||
Sbjct: 12271 agtgcaaacacaggacctggctctggccctattcctggcact-ggctgtttttctcccta 12329
Query: 642 gcgaag-tnagactatt-at-cgcgcgatcgttggtgaatttcagctgcaaatggctg-t 697
|||||| | |||||||| || |||||||||||||||||||| |||||||||| |||| |
Sbjct: 12330 gcgaagttaagactattcatacgcgcgatcgttggtgaattccagctgcaaaatgctgtt 12389
Query: 698 tgagttttctctgtgcaccattttaaagatgac-atggctataaacgata--taagcaac 754
|| |||||||||||||||||||||||||||||| || ||||||||||||| ||||||||
Sbjct: 12390 tgtgttttctctgtgcaccattttaaagatgacaattgctataaacgataattaagcaac 12449
Query: 755 tggnatat-gnatagacacgac-gcattg-actaggttggttgt-aacgcatc-tttttt 809
| | |||| | ||||||||||| |||||| |||||||||||||| |||||||| ||||||
Sbjct: 12450 ttgtatatagtatagacacgacggcattgaactaggttggttgtaaacgcatcttttttt 12509
Query: 810 ttgggggtactgcaca 825
||||||||||||||||
Sbjct: 12510 ttgggggtactgcaca 12525
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6004
Number of Sequences: 1807
Number of extensions: 6004
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)