BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZB04FM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1654 997 0.0
>3x_Contig1654
Length = 17174
Score = 997 bits (503), Expect = 0.0
Identities = 572/587 (97%), Gaps = 6/587 (1%)
Strand = Plus / Minus
Query: 82 taatgacccgcttctgtcaactgtatagtacaaccacacaaaaccagaatatatttatat 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8671 taatgacccgcttctgtcaactgtatagtacaaccacacaaaaccagaatatatttatat 8612
Query: 142 atatatatatatctaattaattccttcattggattccaagttgttctcgcaacctttgat 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8611 atatatatatatctaattaattccttcattggattccaagttgttctcgcaacctttgat 8552
Query: 202 tctctagttgcaacatattgatgcggttcgttgctgcttcagactccagttttcttcttt 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8551 tctctagttgcaacatattgatgcggttcgttgctgcttcagactccagttttcttcttt 8492
Query: 262 cacgttcaccaatccattttttccttaattcgtcaattttcagcttggattgtttctcta 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8491 cacgttcaccaatccattttttccttaattcgtcaattttcagcttggattgtttctcta 8432
Query: 322 cctcatcattctgtgatgagccggaccattcttctttttcgttcagaagcagatcgacat 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8431 cctcatcattctgtgatgagccggaccattcttctttttcgttcagaagcagatcgacat 8372
Query: 382 gttctgtgacaattgattcgatggcagattcaataaaaaagaaaactgaatctaattttg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8371 gttctgtgacaattgattcgatggcagattcaataaaaaagaaaactgaatctaattttg 8312
Query: 442 caattgtctttttgaagaatttggcagagtctagctgttcaa-gttatgcaacttattgg 500
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 8311 caattgtctttttgaagaatttggcagagtctagctgttcaaggttatgcaacttattga 8252
Query: 501 atgctgggtcaatggactctttttggagaaccttctcg-atgacccaaaaattgccctta 559
||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 8251 atgcttggtcaatggactctttttgtagaaccttctcgaatgacccaaaaattgccctta 8192
Query: 560 aatggtcccagagtttaaattttataatggttaactggttgggatccttttatccgcatc 619
|||||||| |||||||| |||||||||| ||||||| |||| ||||| ||||||||||||
Sbjct: 8191 aatggtccaagagtttagattttataattgttaact-gttgtgatcc-tttatccgcatc 8134
Query: 620 tggaaatttatttaacgtgctccccgcaattttataatttcatcttg 666
|| ||||||| |||||||||| |||||| ||||||||||||||||||
Sbjct: 8133 tgaaaattta-ttaacgtgct-cccgcagttttataatttcatcttg 8089
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,542
Number of Sequences: 1807
Number of extensions: 14542
Number of successful extensions: 1755
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)