BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZB04RM1.SCF screened BAC_end
(980 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1584 1094 0.0
>3x_Contig1584
Length = 9710
Score = 1094 bits (552), Expect = 0.0
Identities = 594/607 (97%), Gaps = 1/607 (0%)
Strand = Plus / Plus
Query: 42 gcttacccaataacccaactatatctccggctgctccaatgtccccgttgacaaaactgg 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3119 gcttacccaataacccaactatatctccggctgctccaatgtccccgttgacaaaactgg 3178
Query: 102 atgattctcaggcaagaggtaatgcggactccaagtcagtaggtcctaacggtggtattg 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3179 atgattctcaggcaagaggtaatgcggactccaagtcagtaggtcctaacggtggtattg 3238
Query: 162 taaacagcaatgccacaagcatgtccaaatcaaatacacaagaatctcaggcctcaagtg 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3239 taaacagcaatgccacaagcatgtccaaatcaaatacacaagaatctcaggcctcaagtg 3298
Query: 222 atacggaactgtcacgtatcggtaccattgccagtatgatagatttttctacaaacacaa 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3299 atacggaactgtcacgtatcggtaccattgccagtatgatagatttttctacaaacacaa 3358
Query: 282 atttgaatctaatcgatttgaaattgtttcaccattattgcacaaacgtttggccgacca 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3359 atttgaatctaatcgatttgaaattgtttcaccattattgcacaaacgtttggccgacca 3418
Query: 342 taactgctgctggaatcagtgagaagaaaatatggtccgtcgacgtgcctgagatagcgt 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3419 taactgctgctggaatcagtgagaagaaaatatggtccgtcgacgtgcctgagatagcgt 3478
Query: 402 ttgaatacccatttttaatgcatgccttgttagcgtttagcgcaactcattnttctcgta 461
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 3479 ttgaatacccatttttaatgcatgccttgttagcgtttagcgcaactcatttttctcgta 3538
Query: 462 ccgagagtggtttgggaagatatgtaacacagcatatgttggaagcacttcgattattga 521
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 3539 ccgagagtggtttggaaagatatgtaacacagcataggttggaagcacttcgattattga 3598
Query: 522 gagaagcagtacttgaaatttacgaattccatacagatgccctaattgcaagcggcatta 581
|||||||||||||||||||| |||||| | |||||||||||||| ||||||||| |||||
Sbjct: 3599 gagaagcagtacttgaaattaacgaatccaatacagatgccctagttgcaagcgccatta 3658
Query: 582 tcctaataatggatttcctagctaacgcagccacgcttaccgccagtggattcaacaagc 641
||||||||||||||| | |||||||||||||||||| ||||||||||||| ||||| |||
Sbjct: 3659 tcctaataatggattccttagctaacgcagccacgcctaccgccagtggagtcaac-agc 3717
Query: 642 cctttga 648
|||||||
Sbjct: 3718 cctttga 3724
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6520
Number of Sequences: 1807
Number of extensions: 6520
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 980
length of database: 10,358,551
effective HSP length: 16
effective length of query: 964
effective length of database: 10,329,639
effective search space: 9957771996
effective search space used: 9957771996
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)