BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZB05RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1617 1170 0.0
>3x_Contig1617
Length = 15119
Score = 1170 bits (590), Expect = 0.0
Identities = 735/772 (95%), Gaps = 11/772 (1%)
Strand = Plus / Minus
Query: 116 caagtctgggaacattcagggtagttttgaggaattgaatctacatttgagggatcacac 175
|||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15079 caagactgggcacatacagggtagttttgaggaattgaatctacatttgagggatcacac 15020
Query: 176 tttcgttttgggtactgctcaaccaaccgtctccgatgttacattgttcgaacatgtttt 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15019 tttcgttttgggtactgctcaaccaaccgtctccgatgttacattgttcgaacatgtttt 14960
Query: 236 accagttgccaaggagttgatcaactcttctaaagatgtcaagggtaactatgctaagta 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14959 accagttgccaaggagttgatcaactcttctaaagatgtcaagggtaactatgctaagta 14900
Query: 296 cagacatattcttagatggtcacaatacttgaacgatttattacaattgaacgacttgac 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14899 cagacatattcttagatggtcacaatacttgaacgatttattacaattgaacgacttgac 14840
Query: 356 tttgaacattgatttggatcttccacgtgaagtcatcgaaaagaagaagaaggaagataa 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14839 tttgaacattgatttggatcttccacgtgaagtcatcgaaaagaagaagaaggaagataa 14780
Query: 416 gaaggacgaggctgaagcttccaagaagggcggtgaagcagcagcaaagaaggatggtaa 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14779 gaaggacgaggctgaagcttccaagaagggcggtgaagcagcagcaaagaaggatggtaa 14720
Query: 476 ggccgataaacaaccaagaggtaagccagatgaagaaactttaaagaaattgagagaaga 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14719 ggccgataaacaaccaagaggtaagccagatgaagaaactttaaagaaattgagagaaga 14660
Query: 536 agctaaggcaaagaatgctgccaagaaggccgccaatgcccaacaagcccaagcaccatc 595
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 14659 agctaaggcaaagaaggctgccaagaaggccgccaatgcccaacaagcccaagcaccagc 14600
Query: 596 ccaagagtctgccaaaccatctccaggtgtaattgatttccgtgttggtttcatttcata 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 14599 ccaagagtctgccaaaccatctccaggtgtaattgatttccgtgttggtttcattcaaaa 14540
Query: 656 agctatcaagcattcagatgctgactctctatatgtttctaccatcgattgttgtgatga 715
|||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 14539 ggctatcaagcatccagatgctgactctctatatgtttctaccatcgatgttggtgatga 14480
Query: 716 aga-ggtccaagaaccgtttgttctgttctaatgaattactt-ccattggaagcttatgc 773
||| |||||||||||||||||||||| |||| |||| ||||| ||||||||||| |||||
Sbjct: 14479 agagggtccaagaaccgtttgttctggtctagtgaaatacttcccattggaagc-tatgc 14421
Query: 774 -agaacgttttgtcgttgttggtttgcaactt-aagccagtttatttgaaggggttttaa 831
|||||||| |||||||||| ||||||||||| ||||||||| || ||| ||| | | |
Sbjct: 14420 aagaacgttatgtcgttgtt-gtttgcaacttaaagccagttaatatga--ggggtatca 14364
Query: 832 aattcactgttattgggtcctttgtgggttctgatgaaaacaacgtcaaatt 883
||| ||||| ||| ||| |||||| ||||||||||||||||||||| ||||
Sbjct: 14363 aatccactgctat--ggttctttgt-ggttctgatgaaaacaacgtcgaatt 14315
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7763
Number of Sequences: 1807
Number of extensions: 7763
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)