BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZB06FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1759 1269 0.0
>3x_Contig1759
Length = 25622
Score = 1269 bits (640), Expect = 0.0
Identities = 768/799 (96%), Gaps = 9/799 (1%)
Strand = Plus / Plus
Query: 85 aaagtagagcaagataccaaggcatccagtgctattatagtaacgtttgagaaagaagac 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18069 aaagtagagcaagataccaaggcatccagtgctattatagtaacgtttgagaaagaagac 18128
Query: 145 cacactctagggaatttgattagagccgaacttttagaagatgaaggagttctttttgca 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18129 cacactctagggaatttgattagagccgaacttttagaagatgaaggagttctttttgca 18188
Query: 205 gcttataaggtagagcatccgttatttgccaagtttaaaatgagaattcagactgtggaa 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18189 gcttataaggtagagcatccgttatttgccaagtttaaaatgagaattcagactgtggaa 18248
Query: 265 ggatacgatccgaaggatgcgttgaagaacgcatgtaatagcattatcaataagttggct 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18249 ggatacgatccgaaggatgcgttgaagaacgcatgtaatagcattatcaataagttggct 18308
Query: 325 cagctgcagtctaacttcgaaacagaatggaatttgcaaacgttggctactgaggattat 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18309 cagctgcagtctaacttcgaaacagaatggaatttgcaaacgttggctactgaggattat 18368
Query: 385 ggtatgtaatagtgttggaaattgctcaagtgtattaaacaagtgtcaggtaattcatct 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18369 ggtatgtaatagtgttggaaattgctcaagtgtattaaacaagtgtcaggtaattcatct 18428
Query: 445 tttcaaaagaattattgaacctccttcggtttttctctatcccctcttcccttctatgta 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18429 tttcaaaagaattattgaacctccttcggtttttctctatcccctcttcccttctatgta 18488
Query: 505 ttattttcatgaactgtgttgtgtttcggctataaaataggagagcgtattactatccac 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18489 ttattttcatgaactgtgttgtgtttcggctataaaataggagagcgtattactatccac 18548
Query: 565 cgtaaagttcaacgttcattgtgtataggactatttcttttgggttttttgggtattatc 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18549 cgtaaagttcaacgttcattgtgtataggactatttcttttgggttttttgggtattatc 18608
Query: 625 agtacagaatagtgaccttgtttgc-ataaaaaaactttggaagg-accagattttcgaa 682
||||||||||||||||||||||||| |||||||||| |||||||| || |||| ||||||
Sbjct: 18609 agtacagaatagtgaccttgtttgcaataaaaaaaccttggaaggaacaagatattcgaa 18668
Query: 683 -tttgatattctcacatctttctaactggggataca-ttgntgttactttttagattcag 740
|||||||| |||||||||||||||| | ||||| ||| |||||||||| |||| |||
Sbjct: 18669 ttttgatatcttcacatctttctaact-tgtatacatttgttgttacttttaagatacag 18727
Query: 741 tttttctggggagggatcttgtttagattcaatt-tttatttatggtaaattaaacaaa- 798
||||||||| |||||||| |||| |||||||||| || ||||||| |||||||||||||
Sbjct: 18728 tttttctggtgagggatcatgttaagattcaattattaatttatgttaaattaaacaaat 18787
Query: 799 ttattctgccaggcccaggcttatttcttc-cagattccaaattaact-atggaacaatg 856
|||||||| ||| |||||||||||||| || ||||||| ||||||||| ||| |||||||
Sbjct: 18788 ttattctggcagccccaggcttatttcatcacagattcaaaattaactaatgaaacaatg 18847
Query: 857 aaatttgacaggggaagat 875
|||| ||||||| ||||||
Sbjct: 18848 aaatctgacaggtgaagat 18866
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7225
Number of Sequences: 1807
Number of extensions: 7225
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)