BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZB06RM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1428 1328 0.0
>3x_Contig1428
Length = 9146
Score = 1328 bits (670), Expect = 0.0
Identities = 767/792 (96%), Gaps = 7/792 (0%)
Strand = Plus / Minus
Query: 34 ctaacctttaagca--ccaagtggatcagttagttaag-tcccaatcatctatcaagcta 90
|||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 7730 ctaagctttaagcaacccaagtggatcagttagttaagctcccaatcatctatcaagcta 7671
Query: 91 gtggctagcgctcttattcaaccagaaggtactcgctggactgtctcatttcccgaacag 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7670 gtggctagcgctcttattcaaccagaaggtactcgctggactgtctcatttcccgaacag 7611
Query: 151 cggaatattaccgaacgataaacctatcgaacgatacggcggaaaacttttcaataacta 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7610 cggaatattaccgaacgataaacctatcgaacgatacggcggaaaacttttcaataacta 7551
Query: 211 tggaacctgtattctcgagtagaatctcaattaaatggggtgaacaagagccccacgagg 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7550 tggaacctgtattctcgagtagaatctcaattaaatggggtgaacaagagccccacgagg 7491
Query: 271 ataccaatacatgggtccttactgctggtaatgggaagttcgtagatgcaagaattgact 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7490 ataccaatacatgggtccttactgctggtaatgggaagttcgtagatgcaagaattgact 7431
Query: 331 taaaaaccaatataccacagtggttaataactggagaagaacaagaaattcctacaaaag 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7430 taaaaaccaatataccacagtggttaataactggagaagaacaagaaattcctacaaaag 7371
Query: 391 acggctacgagttttctttgaaatttgttcatgaactggattctgtacatggaaatgatc 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7370 acggctacgagttttctttgaaatttgttcatgaactggattctgtacatggaaatgatc 7311
Query: 451 ccgagcgtagtgctgattttggtcatttcaaatccctgacatatagtagtagactcgagg 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7310 ccgagcgtagtgctgattttggtcatttcaaatccctgacatatagtagtagactcgagg 7251
Query: 511 aaggggagatgtataatgtttctgaggagagagtcatgacgtataaagaaattt-gcaaa 569
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 7250 aaggggagatgtataatgtttctgaggagagagtcatgacgtataaagaaatttggcaaa 7191
Query: 570 ccattgaccccat-agatctt-aacagatcatctagtacccgtagagtctgatatatatg 627
|||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 7190 ccattgacccaataagatcttcaacagatcatctagtacccgtagagtctgatatatatg 7131
Query: 628 atggatctagtgtcacgtctattgtctgggagctgtcngacgacgccaagattaatgcac 687
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 7130 atggatctagtgtcacgtctattgtctgggagctgtcggacgacgccaagaataatgcac 7071
Query: 688 gccgggagattgatcagtataggaaaagttagtccagggatggtgggattttacggattg 747
| |||||||||||||||||||||||||||||||| ||| || |||| || | ||||||||
Sbjct: 7070 g-cgggagattgatcagtataggaaaagttagtcaaggaattgtggaatataacggattg 7012
Query: 748 gttcagtgcattaaaacgtggattaactcagtggtttaccaatacgggtcctatggggaa 807
|||||||||||| |||||||| |||||||||||| ||||||||||| || ||| ||||
Sbjct: 7011 tttcagtgcattagaacgtggaataactcagtggtataccaatacggttctcatgtggaa 6952
Query: 808 gaaatttttggg 819
||||||||||||
Sbjct: 6951 gaaatttttggg 6940
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6324
Number of Sequences: 1807
Number of extensions: 6324
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)