BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZB07FM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig717 1120 0.0
>3x_Contig717
Length = 3533
Score = 1120 bits (565), Expect = 0.0
Identities = 647/673 (96%), Gaps = 1/673 (0%)
Strand = Plus / Plus
Query: 87 cttcctacgggcggcatgtccttgaagatgaaaccaacacatcaacaacagcagcttgct 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1669 cttcctacgggcggcatgtccttgaagatgaaaccaacacatcaacaacagcagcttgct 1728
Query: 147 cctcaacatacacatcaagaatttgcgggcgctccctccaattctgctttgcccttgcaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1729 cctcaacatacacatcaagaatttgcgggcgctccctccaattctgctttgcccttgcaa 1788
Query: 207 ggaaaacgttcgaatcccggatctttgattaatggtattcaatccacttctacttctttg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1789 ggaaaacgttcgaatcccggatctttgattaatggtattcaatccacttctacttctttg 1848
Query: 267 gctaatagttcacatgatacacttggcactgatcctaaatctaatcctacttctaattct 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1849 gctaatagttcacatgatacacttggcactgatcctaaatctaatcctacttctaattct 1908
Query: 327 aactctggtatcggtggattgtttgctaatttttccaagtatgtcaatattaaatcagga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1909 aactctggtatcggtggattgtttgctaatttttccaagtatgtcaatattaaatcagga 1968
Query: 387 tctctaaatttcgcaggtaagctgtctttatcctctaaaggtgtagactttagcaacggt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1969 tctctaaatttcgcaggtaagctgtctttatcctctaaaggtgtagactttagcaacggt 2028
Query: 447 tccagtttccggataaagttacatgaactagagtttctggaagaattgggtcatggtaac 506
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 2029 tccagtttccggataaagttagatgaactagagtttctggaagaattgggtcatggtaac 2088
Query: 507 tatggtaacgcatccaaagttttacacaagccgactcatatcataatggccatgaaagaa 566
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2089 tatggtaacgtatccaaagttttacacaagccgactcatatcataatggccatgaaggaa 2148
Query: 567 gtcagattggaattggacgaatcaaagcttacacagatcttaatggaacgtgaagttttg 626
||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||
Sbjct: 2149 gtcagattggaattggacgaatcaaagtttagacagatcttaatggaacttgaagttttg 2208
Query: 627 cataattgccagttaccgtacattagagatttctacggagcatttttcatggaagtgccc 686
||||||||||||| |||||||||| ||||||||||| ||||||||||| |||| ||
Sbjct: 2209 cataattgccagtcaccgtacattgtggatttctacggtgcatttttcattgaaggtgcc 2268
Query: 687 gttcaattgtggaaagaatatatgggatggtggatctccagataaaacttttgatgatga 746
||| | |||| | |||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct: 2269 gtttatatgtgtatggaatatat-ggatggtggatctctagataaaacttatgatgatga 2327
Query: 747 accaattgggggg 759
|| ||| ||||||
Sbjct: 2328 acaaatagggggg 2340
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6850
Number of Sequences: 1807
Number of extensions: 6850
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)