BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZB07RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1411 1330 0.0
>3x_Contig1411
Length = 7271
Score = 1330 bits (671), Expect = 0.0
Identities = 772/798 (96%), Gaps = 6/798 (0%)
Strand = Plus / Minus
Query: 50 cttaaacaaaccacatttaaaagata-caaaaagagacaacacatagaggtaaattgggt 108
|||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||
Sbjct: 4388 cttaaacaaaccacatttaaaagaaaacaaaaagagacaacacagagaggtaaattgggt 4329
Query: 109 gccttccattgatttgttgctccaatgataaacaagacccgtgaaactaaactcagggac 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4328 gccttccattgatttgttgctccaatgataaacaagacccgtgaaactaaactcagggac 4269
Query: 169 gattttggtgtgaattttctgggttctttgtcacataaacctaaactgtcgttcatttct 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 4268 gattttggtgtgaattttctgggttctttgtcacataaacctaaactgtcgttcagttct 4209
Query: 229 actaaaaatattggcggcaatgggaacgatcggtttattcctaaaaccacatccaaaaag 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4208 actaaaaatattggcggcaatgggaacgatcggtttattcctaaaaccacatccaaaaag 4149
Query: 289 agttattactcgtcttcacaattgcaaaattttctgactagtcttgaacaattggttgat 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4148 agttattactcgtcttcacaattgcaaaattttctgactagtcttgaacaattggttgat 4089
Query: 349 ccgctgttgcaatccagaagcccatctcctgaattcttcatgggccatgacttgcccgtg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4088 ccgctgttgcaatccagaagcccatctcctgaattcttcatgggccatgacttgcccgtg 4029
Query: 409 aacaccttattgacacaagaaatatcttctatcctagattcaggtgagaagaagagtaag 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4028 aacaccttattgacacaagaaatatcttctatcctagattcaggtgagaagaagagtaag 3969
Query: 469 aaaaaagtatccaggcataccaaacagcataggaaatatatggctgatgcactatggttc 528
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 3968 aaaaaagtatccaggcataccaaacagcataggaaatatatggctgatgcactagggttc 3909
Query: 529 ccagattacaatagggttctccaattttctcacatgataccatcgttgactattccatcg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3908 ccagattacaatagggttctccaattttctcacatgataccatcgttgactattccatcg 3849
Query: 589 ttatctgnggatccattaa-ttcaattctaccaccaccagaagcgctgaaatatgtcaac 647
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 3848 ttatctgtggatccattaatttcaattctaccaccaccagaagcgctgaaatatgcaaac 3789
Query: 648 gctcagttatcgtcatggctcaataacaaagatgttgagaaacagagattcagcaagaga 707
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3788 gctcagttatcgtcatggctcaataacaaagatgttgagaaacagagaatcagcaagaga 3729
Query: 708 gcagaatcataggtccaatttaga-tccttgatgccccacatttgcggaaagatttttat 766
||||||||| ||||| ||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 3728 gcagaatcaagggtcccatttagagtccttgaggccccacatttgcggaaagatttttat 3669
Query: 767 cccaat-ttgtggattggtctcttgcc-ctaattatgtccctgttggcctttgataccgt 824
||||| ||||||||||||||| |||| ||||| ||||| ||||| ||| ||||||| |
Sbjct: 3668 tccaatcttgtggattggtctcatgccactaataatgtcgctgtt-gcccttgatacggc 3610
Query: 825 tgtttttctatggtcaga 842
||| ||||||||||||||
Sbjct: 3609 tgtatttctatggtcaga 3592
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7134
Number of Sequences: 1807
Number of extensions: 7134
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)