BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZB08FM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1220 904 0.0
3x_Contig1604 236 6e-62
>3x_Contig1220
Length = 4729
Score = 904 bits (456), Expect = 0.0
Identities = 461/463 (99%)
Strand = Plus / Plus
Query: 86 gtggttcggtggtggtgctgatttaactccttcttatttgtacgaggaagacgctaaatt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4267 gtggttcggtggtggtgctgatttaactccttcttatttgtacgaggaagacgctaaatt 4326
Query: 146 gttccatcaattgcacaaggatgctttggacaaaacggacgttgccttgtacccaaaata 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4327 gttccatcaattgcacaaggatgctttggacaaaacggacgttgccttgtacccaaaata 4386
Query: 206 caagaaatggtgcgatgagtatttctatatcaaacacagagaagaaaccagaggtatcgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4387 caagaaatggtgcgatgagtatttctatatcaaacacagagaagaaaccagaggtatcgg 4446
Query: 266 tggtattttctttgatgatgtcgatgatcgtgatccaaacgaaatcttgcaaatggttga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4447 tggtattttctttgatgatgtcgatgatcgtgatccaaacgaaatcttgcaaatggttga 4506
Query: 326 aaactgttttgatgccttcttgccatcttacctcgaaatcatcaaaagaagaaaggatat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4507 aaactgttttgatgccttcttgccatcttacctcgaaatcatcaaaagaagaaaggatat 4566
Query: 386 gccttacactgaagaagaaagacaatggcaacaaattagacgtggcagatacgttgaatt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4567 gccttacactgaagaagaaagacaatggcaacaaattagacgtggcagatacgttgaatt 4626
Query: 446 caacctagtccttgacagaggtactcaattcggtttaagaactccaggatcccgtgtcga 505
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 4627 caacctagtccttgacagaggtactcaattcggnttaagaactccaggatcccgtgtcga 4686
Query: 506 aagtattttgatgtctttgcctgtgactgcttcgtggttgtat 548
|||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 4687 aagtattttgatgtctttgcctgtgactgcttcgtgtttgtat 4729
>3x_Contig1604
Length = 15703
Score = 236 bits (119), Expect = 6e-62
Identities = 230/261 (88%), Gaps = 6/261 (2%)
Strand = Plus / Plus
Query: 656 aattcttagnttctaatgatcttaatttcttacgcttcaaaaccaagttggtcgttagta 715
||||||||| |||||||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct: 2 aattcttagtttctaatgatcttaatttcttacgcttcaaaaaccagtcggtcgttagta 61
Query: 716 ccatacagcgttgcacgaaatggttctgactagccgtcgacaatacttttattttgctct 775
|||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
Sbjct: 62 ccatacagcgttgcacgaaatggttctgtcacgccgtcgacaatacttttattttgtctt 121
Query: 776 gttccatccatttggtagatttatacattatattaccacttggattcacaaaaaatttaa 835
|||| ||| |||| ||||||||||||||||||||| ||||| |||||| || || ||| |
Sbjct: 122 gttcaatctattt-gtagatttatacattatatta-cactttgattcagaagaagtttca 179
Query: 836 ttaaaaccctaacaacttctttttgcaagccttatggaaaaccggaatctacctttcatt 895
| |||||||||||||||| |||||| ||||| ||| ||| || |||||||||||||
Sbjct: 180 -tcaaaccctaacaacttccttttgcgagcctaatg--aaagcgtgatctacctttcatc 236
Query: 896 attttgaaagattaagcatgc 916
| |||||||||||||||||||
Sbjct: 237 a-tttgaaagattaagcatgc 256
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7642
Number of Sequences: 1807
Number of extensions: 7642
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 2
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)