BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZB08RM1.SCF screened BAC_end
(893 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1568 1370 0.0
>3x_Contig1568
Length = 12470
Score = 1370 bits (691), Expect = 0.0
Identities = 768/787 (97%), Gaps = 5/787 (0%)
Strand = Plus / Plus
Query: 39 ataagggcgtaaaaaaccttgaaaccagataatcttggttccacgaagttcaccactgcc 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6224 ataagggcgtaaaaaaccttgaaaccagataatcttggttccacgaagttcaccactgcc 6283
Query: 99 caagttgcaatgaaaggattggatattataagcaagacaaggttttttatcgacagcctt 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6284 caagttgcaatgaaaggattggatattataagcaagacaaggttttttatcgacagcctt 6343
Query: 159 agattactctcgataattgtcgtagttcttgtcattgggaatgcatttcttgcccatcac 218
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 6344 agattactctcgataattgtcgtagttcttgtcattgggaatgcaag-caagcccatcac 6402
Query: 219 aatcgcaagtgagaaattcaatactaatagagaagtcaaaacaatggccatatagatgta 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6403 aatcgcaagtgagaaattcaatactaatagagaagtcaaaacaatggccatatagatgta 6462
Query: 279 tgcgaaagctttaaatctgtatgagaaaggttcttggattcttagtctagttctcgaaag 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6463 tgcgaaagctttaaatctgtatgagaaaggttcttggattcttagtctagttctcgaaag 6522
Query: 339 cagcggaagcaccgaaaatataccactgagtcccaaaaggactcgaggtagagggaaata 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6523 cagcggaagcaccgaaaatataccactgagtcccaaaaggactcgaggtagagggaaata 6582
Query: 399 aacgaatagttgcgaagtagcaaaggcaaataccaaagaaatgcagaatgttagaattga 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6583 aacgaatagttgcgaagtagcaaaggcaaataccaaagaaatgcagaatgttagaattga 6642
Query: 459 ccaaatgttgtatatagacagcaacggaagttcaccatatttgttattcaaaatttgatt 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6643 ccaaatgttgtatatagacagcaacggaagttcaccatatttgttattcaaaatttgatt 6702
Query: 519 taatgctgcgaatacaaaggccaccgatacagccaccgcagtcgccaaataagtcccgat 578
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 6703 taatgctgcgaatacaaaggccaccgagacagccaccgcagtcgccaaataagtcccgat 6762
Query: 579 tgatataaaataccgaggtgctagtagaagataaaagaagattgattgatggaatttttc 638
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 6763 tgatataaaataccgaggtgctagtagaagataaaagaagaatgattgatggaatttttc 6822
Query: 639 aagcaagttattgacagatctagacaatgcctctggcacacgaccaaatgttgtgatgtc 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6823 aagcaagttattgacagatctagacaatgcctctggcacacgaccaaatgttgtgatgtc 6882
Query: 699 gtgtgggtcatcaatcccctta-ccttttaagtcaatgattggattcttcaaccactaaa 757
|||||| |||||||||||||| ||||| ||||||||||||||||||| |||||||||||
Sbjct: 6883 gtgtggtccatcaatccccttagcctttaaagtcaatgattggattctccaaccactaaa 6942
Query: 758 tgcttcattacggt-acagttcttgattccag-aagtactga-tcttttaattccaaaag 814
||||||||||| || ||||||||||||||||| ||||||||| ||||||| | |||||||
Sbjct: 6943 tgcttcattaccgtaacagttcttgattccagaaagtactgagtcttttattcccaaaag 7002
Query: 815 cttcgtt 821
| |||||
Sbjct: 7003 catcgtt 7009
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7048
Number of Sequences: 1807
Number of extensions: 7048
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 893
length of database: 10,358,551
effective HSP length: 16
effective length of query: 877
effective length of database: 10,329,639
effective search space: 9059093403
effective search space used: 9059093403
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)