BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZB09FM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig357 894 0.0
>3x_Contig357
Length = 1454
Score = 894 bits (451), Expect = 0.0
Identities = 555/584 (95%), Gaps = 5/584 (0%)
Strand = Plus / Minus
Query: 306 cccactaattcagaaaggaggtaatttctaaagacacataaattggcacttactgcgtta 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1444 cccactaattcagaaaggaggtaatttctaaagacacataaattggcacttactgtgtta 1385
Query: 366 aacttgaagcttgcagcgaaaatcgcatacatgtaaagagtacgtgggacaagcaatgcc 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1384 aacttgaagcttgcagcgaaaatcgcatacatgtaaagagtacgtgggacaagcaatgcc 1325
Query: 426 ttgctagaaagcaaacttctatcagttcgcaagaagccatccataattttatcaaactga 485
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1324 ttgctagaaagcaaacttctagcagttcgcaagaagccatccataattttatcaaactga 1265
Query: 486 gagatagagagatagtcaacactgttgaggcaaattctatagataattttgcaattgtaa 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1264 gagatagagagatagtcaacactgttgaggcaaattctatagataattttgcaattgtaa 1205
Query: 546 aacgatgtgacctccgaagagttcttgtcgaagagaacagtgataatttcattgctttga 605
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1204 aaggatgtgacctccgaagagttcttgtcgaagagaacagtgagaatttcattgctttgg 1145
Query: 606 tcttctgtaaatgaagatatcaaatcttcgatagatacattcacacaggaggagaatatg 665
||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 1144 tcttctgtaaatgaagagatcaaatcttcgaaagagacattcacacaggaggagaatatg 1085
Query: 666 ttgntttcatggaaatatgtnatttgttcatcgctcatacaatcattatcagcagttaat 725
||| |||||||||||||||| |||||||||||||||| ||||| || |||||||||||||
Sbjct: 1084 ttgttttcatggaaatatgttatttgttcatcgctcaaacaattataatcagcagttaat 1025
Query: 726 gcgtagcatctcgttaaaaac-acatatgcgaagtactgactt-atctgaggatccggtt 783
|||||||||||||||||||| ||| ||||||||||||||||| ||||| ||| |||| |
Sbjct: 1024 tcgtagcatctcgttaaaaacaacaaatgcgaagtactgacttcatctg-ggaaccgggt 966
Query: 784 taagatcttatccacaacttgtgacagtcttatcaatttcaaatactcgactaatgaacg 843
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
Sbjct: 965 taagatcttatccacaacttgtgacagtctaatcaatttcaaataatcgactaatgaa-g 907
Query: 844 cggcccctttatctgtcaatatatggtngcagtaatcctaaggg 887
|| | |||||| |||||||||||| || ||||||| ||||||||
Sbjct: 906 cgtctcctttagctgtcaatatat-gtggcagtaagcctaaggg 864
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6102
Number of Sequences: 1807
Number of extensions: 6102
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)