BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZB09RM1.SCF screened BAC_end
(826 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1480 650 0.0
>3x_Contig1480
Length = 8659
Score = 650 bits (328), Expect = 0.0
Identities = 367/379 (96%), Gaps = 1/379 (0%)
Strand = Plus / Plus
Query: 48 tatctcaacgataatggttctccattctataaaacaaagacaattaaaaagactttggat 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6724 tatctcaacgataatggttctccattctataaaacaaagacaattaaaaagactttggat 6783
Query: 108 cctacttggaacgaatcatgcacagttcaagtcgcaaatcgtgtcaacaactatctaaaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6784 cctacttggaacgaatcatgcacagttcaagtcgcaaatcgtgtcaacaactatctaaaa 6843
Query: 168 atcaaaattatggattgggatgctggtaataaagacgacaacattggcgaagccatacta 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6844 atcaaaattatggattgggatgctggtaataaagacgacaacattggcgaagccatacta 6903
Query: 228 cccctatctaagattgaccccgaaaatccaactgaattggatattccgctagtattgcca 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6904 cccctatctaagattgaccccgaaaatccaactgaattggatattccgctagtattgcca 6963
Query: 288 agcgaatagatagaagatgcgggtgtcgttcacttatcatttgagttccaaccaagatna 347
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6964 agcgaaaagaaagaagatgcgggtgtcgttcacttatcatttgagttccaaccaagatac 7023
Query: 348 cgtttagctgtcactagaatagagacaaaaatcggtgatcttgcccgtaaaagtttcttt 407
||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||| |
Sbjct: 7024 gttttagctgtcactagaaaagagacaaaaatcggtgatcttgccggtaaaggtttc-tc 7082
Query: 408 tgccgaactacaagcaggt 426
||||| |||||||||||||
Sbjct: 7083 tgccggactacaagcaggt 7101
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,645
Number of Sequences: 1807
Number of extensions: 24645
Number of successful extensions: 274
Number of sequences better than 1.0e-20: 1
length of query: 826
length of database: 10,358,551
effective HSP length: 16
effective length of query: 810
effective length of database: 10,329,639
effective search space: 8367007590
effective search space used: 8367007590
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)