BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC32ZB10FM1.SCF screened BAC_end (931 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig369 398 e-111 >3x_Contig369 Length = 1572 Score = 398 bits (201), Expect = e-111 Identities = 207/209 (99%) Strand = Plus / Minus Query: 283 ggacgctacctgggggctcgcactcaacaacggagagataatcttaactatattttctga 342 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1337 ggacgctaccggggggctcgcactcaacaacggagagataatcttaactatattttctga 1278 Query: 343 accgacaataatttgattcttatcacataagtaatcaagtattattccgtaggagtccca 402 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1277 accgacaataatttgatgcttatcacataagtaatcaagtattattccgtaggagtccca 1218 Query: 403 atctttcacgatgctatcaattccggacgccttataaaaatgacccttagtgaatacata 462 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1217 atctttcacgatgctatcaattccggacgccttataaaaatgacccttagtgaatacata 1158 Query: 463 gtcagtcgctttgtgagcactttctttga 491 ||||||||||||||||||||||||||||| Sbjct: 1157 gtcagtcgctttgtgagcactttctttga 1129 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 23,440 Number of Sequences: 1807 Number of extensions: 23440 Number of successful extensions: 459 Number of sequences better than 1.0e-20: 1 length of query: 931 length of database: 10,358,551 effective HSP length: 16 effective length of query: 915 effective length of database: 10,329,639 effective search space: 9451619685 effective search space used: 9451619685 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)