BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZB10RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1529 1039 0.0
>3x_Contig1529
Length = 11812
Score = 1039 bits (524), Expect = 0.0
Identities = 702/748 (93%), Gaps = 10/748 (1%)
Strand = Plus / Plus
Query: 37 tacaaaccttcgatctcacagaaactcggttcatcacaaccgctcaattctcagcgtatc 96
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2602 tacaaagcttcgatctcacagaaactcggttcatcacaaccgctcaattctcagcgtatc 2661
Query: 97 agctataatatatgtggtttacaaagtgttttgaccgaaaaggatatactatctgctaac 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2662 agctataatatatgtggtttacaaagtgttttgaccgaaaaggatatactatctgctaac 2721
Query: 157 ctcgaaattactacgaagtgggtacaagatttgactgaggttgggcctaattaccaccgc 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2722 ctcgaaattactacgaagtgggtacaagatttgactgaggttgggcctaattaccaccgc 2781
Query: 217 ctcttgatccgaatgatggatttcattcttcaacagcgcaagcctataatgagccgccaa 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2782 ctcttgatccgaatgatggatttcattcttcaacagcgcaagcctataatgagccgccaa 2841
Query: 277 tacgcatttgaattggactctaaaaatactattaaattcatgagactgatggtgaaacac 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2842 tacgcatttgaattggactctaaaaatactattaaattcatgagactgatggtgaaacac 2901
Query: 337 attcttacttattttccaggcactaccaacattggagatgtgttgggtaaaaaagcatac 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2902 attcttacttattttccaggcactaccaacattggagatgtgttgggtaaaaaagcatac 2961
Query: 397 aacatgactgaaaaagatagaagatggctaacgaaaataggagtattctttgagaacact 456
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2962 aacatgactgaaaaagaaagaagatggctaacgaaaataggagtattcttgaagaacact 3021
Query: 457 cgac-atttcaaccattttctgcttcgtattttgagcaatacgttataaaag-aatcatt 514
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 3022 cgacaatttcaaccattttctgcttcgtattttgagcaatacgttataaaagaaatcatt 3081
Query: 515 cgagataatctaaccttagatcttatcaaatctattttagttggcaagaaactagaaact 574
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 3082 cgagataatctaaccatagatctagtcaaatctattttagttggcaagaaactagaactt 3141
Query: 575 gacgct-cccttgctcgcttttactta-taatgccccaggatgctgggaccctaaattat 632
|||||| |||| |||||||||||| || |||||| |||||||||||||| |||||| ||
Sbjct: 3142 gacgctcccctcgctcgcttttacatagtaatgcagcaggatgctgggacactaaataat 3201
Query: 633 -tttaccggattgtcagtcatttgt-atttaagaataccagaaacatttgg-agaacctt 689
|| || |||| |||||||||||| ||| |||| || ||||||| | || ||||| |
Sbjct: 3202 attaacaggatgttcagtcatttgtcattaaagataacgagaaacaataggaagaacgat 3261
Query: 690 ttttttttaccagcaaaaataatttctaatatttaactcaaaaaattcggcaaaaatttc 749
| | ||||||||||||||| || ||||||||| ||||| |||||||||||||| || |
Sbjct: 3262 atcatcttaccagcaaaaatatttcctaatattt-actcagaaaattcggcaaaacttcc 3320
Query: 750 ttttaattctgcc-ggaaaatgggttaa 776
|||||| |||||| ||||||||||||||
Sbjct: 3321 ttttaa-tctgccaggaaaatgggttaa 3347
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8476
Number of Sequences: 1807
Number of extensions: 8476
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)