BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZB11FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig858 1130 0.0
>3x_Contig858
Length = 3029
Score = 1130 bits (570), Expect = 0.0
Identities = 677/702 (96%), Gaps = 8/702 (1%)
Strand = Plus / Minus
Query: 84 atcaaaaggataaaccctccgatgaactacttgaaagttaatgtaaatgcagtcattccc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1264 atcaaaaggataaaccctccgatgaactacttgaaagttaatgtaaatgcagtcattccc 1205
Query: 144 tcttattctcatacccgaagctactgtcttggtttttcaatgaacttcatatgaagttga 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1204 tcttattctcatacccgaagctactgtcttggtttttcaatgaacttcatatgaagttga 1145
Query: 204 gtatatatatatctttaaaatcttttagaattaacaactatagctgctaaagttgtccac 263
||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1144 gtatatagataaccataaaatcttttagaattaacaactatagctgctaaagttgtccac 1085
Query: 264 aattactactgtaatattatcattgtcatgtgtaaaactcaacttgtttgtgatttacaa 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1084 aattactactgtaatattatcattgtcatgtgtaaaactcaacttgtttgtgatttacaa 1025
Query: 324 taaaaatctcgttagtttgaaagggtgacatttactcatttcataattaactaactcgga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 taaaaatctcgttagtttgaaagggtgacatttactcatttcataattaactaactcgga 965
Query: 384 agagagagctttcgagaaatagagctaaatctttgaagcatgtaataaactgccatattc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 agagagagctttcgagaaatagagctaaatctttgaagcatgtaataaactgccatattc 905
Query: 444 ggtttaatcagccaaatcctgtaccaactgtatattccccccatcaaaaaaagagagatt 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 ggtttaatcagccaaatcctgtaccaactgtatattccccccatcaaaaaaagagagatt 845
Query: 504 ctggcgaatgtttatttgagttctttctttttagcatattatgaaaattttctgaacttg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 ctggcgaatgtttatttgagttctttctttttagcatattatgaaaattttctgaacttg 785
Query: 564 aaaaag-agcgatgagatgagatgagcttatacagtagtaactgcactatgggtagcatt 622
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 aaaaagaagcgatgagatgagatgagcttatacagtagtaactgcactatgggtagcatt 725
Query: 623 taattacaacatatacattncttattctctctcgtaggacaattcagcactacaaat-tt 681
||| |||||||||||||| ||||||||||||||||||||||| |||||||||| || |
Sbjct: 724 aaataacaacatatacatt-cttattctctctcgtaggacaatacagcactacagatatg 666
Query: 682 gcagcccacgtcaaaaaagttgaccaagcgttattggaaatctaaggattcgaaaggatt 741
|||| ||||||| |||||||||| ||||||| | | | |||||||||| ||| |||||||
Sbjct: 665 gcag-ccacgtcgaaaaagttgaacaagcgtcaattggaatctaaggagtcg-aaggatt 608
Query: 742 ctgggtaaaattgtaaaaaggagcttaaaaaccttagtgttg 783
|| |||||||||||||||| |||| ||||||| |||||||||
Sbjct: 607 ct-ggtaaaattgtaaaaa-gagc-taaaaacattagtgttg 569
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,644
Number of Sequences: 1807
Number of extensions: 10644
Number of successful extensions: 322
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)