BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZB11RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1550 1342 0.0
>3x_Contig1550
Length = 10740
Score = 1342 bits (677), Expect = 0.0
Identities = 778/808 (96%), Gaps = 3/808 (0%)
Strand = Plus / Minus
Query: 47 gcttagcgagttcgcgttggatgaagaagatgaactagaagaaggtgacgacgaggcaag 106
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 5098 gcttagcgagttcgcgttggaggaagaagatgaactagaagaaggtgacgacgaggcaag 5039
Query: 107 cgtcggggaacgtttggagtatcaaaaggctaaatctactgccacattcagatcacggac 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5038 cgtcggggaacgtttggagtatcaaaaggctaaatctactgccacattcagatcacggac 4979
Query: 167 acgatctactccaccactagtatcaacacctctgagaccaaacactccaccttttccctc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 4978 acgatctactccaccactagtatcaacacctctgagaccaaacactccaccttccccctc 4919
Query: 227 ggctgaatccacatcatctacccaaaaatcttttggtagctctcgaactccacaagagaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4918 ggctgaatccacatcatctacccaaaaatcttttggtagctctcgaactccacaagagaa 4859
Query: 287 aatacagcacgtcttacctccttccctaacgccatctcttccctcagctcaaaggctgaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4858 aatacagcacgtcttacctccttccctaacgccatctcttccctcagctcaaaggctgaa 4799
Query: 347 aaaatctcatagatattccatctcgtcctcctcgaagggatcaacggcctcatcgtcttc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4798 aaaatctcatagatattccatctcgtcctcctcgaagggatcaacggcctcatcgtcttc 4739
Query: 407 atcagtgtcgtctcaatcaccgacagttaatagctcatcacaaaagttctcgaaattggt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4738 atcagtgtcgtctcaatcaccgacagttaatagctcatcacaaaagttctcgaaattggt 4679
Query: 467 acacagactaaaattcggcagaagtagtagcagcagtggtggccaaagtggtcctcaatc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4678 acacagactaaaattcggcagaagtagtagcagcagtggtggccaaagtggtcctcaatc 4619
Query: 527 atggcaatcctaaactggttctatttccccacggtatctaaaaaaaataaaagaattaca 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4618 atggcaatcctaaactggttctatttccccacggtatctaaaaaaaataaaagaattaca 4559
Query: 587 aacagatcagcacctgcattttaaatccctgagcacagtgtcgaacaaacagataattcg 646
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 4558 aacagatcagcacctgcattttaaatccctgagcacagtgtcgaacaaacagaaaattcg 4499
Query: 647 tttctgcaatattaaaacctggatacttacaaaaatactaataccacacactgtgtagac 706
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 4498 tttctgcaatattaaaacctgattacttacaaaaatactaataccacacactgtgtagac 4439
Query: 707 atgcgttagggtctggtaattttncttttctactttagaactcggtttggcctcaccacc 766
||||||| | ||| || ||||| ||||||||||||||||||| | || |||||||||||
Sbjct: 4438 atgcgtt-tgttcttgttatttttcttttctactttagaactctgcttcgcctcaccacc 4380
Query: 767 ccagggattgcaaaattaaaaggtccggatctgcttctacccttaagataggatccctta 826
| | |||||||||||||||| || | ||||||| ||||||||| |||| | || |||||
Sbjct: 4379 caggtgattgcaaaattaaaaagttctgatctgc-tctacccttcagattgtat-cctta 4322
Query: 827 tcatcttataaaaaatccttaaaaagag 854
||||| || ||||||| ||||||||||
Sbjct: 4321 tcatcataataaaaatcattaaaaagag 4294
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6740
Number of Sequences: 1807
Number of extensions: 6740
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)