BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZB12RM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1413 1005 0.0
>3x_Contig1413
Length = 8782
Score = 1005 bits (507), Expect = 0.0
Identities = 638/665 (95%), Gaps = 13/665 (1%)
Strand = Plus / Minus
Query: 68 taggattctgcttgacaatctcgatcaaaacacgacacaaaatataaatggtaataagag 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4478 taggattctgcttgacaatctcgatcaaaacacgacacaaaatataaatggtaataagag 4419
Query: 128 attttctatcggcctggaaagccatttcttttgttctctctacctggttctctaatgatg 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4418 attttctatcggcctggaaagccatttcttttgttctctctacctggttctctaatgatg 4359
Query: 188 caaatttgggatctgaatgagaattcatgcttgtagaggactttgatgaggtatttcttc 247
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 4358 caaatttgggatctgaatgagaattcaggcttgtagaggactttgatgaggtatttcttc 4299
Query: 248 tatgtgtcaacctgctgctagctgagctagatgattttgagtgagttcgactagctgcca 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4298 tatgtgtcaacctgctgctagctgagctagatgattttgagtgagttcgactagctgcca 4239
Query: 308 gaacttgctcattattcttcacatactgctcatattcttgcatgattttatccagttttt 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4238 gaacttgctcattattcttcacatactgctcatattcttgcatgattttatccagttttt 4179
Query: 368 ccgctgctaaagcagctacttcagactttgtcttcctccaaaacatcattgcatctatta 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4178 ccgctgctaaagcagctacttcagactttgtcttcctccaaaacatcattgcatctatta 4119
Query: 428 ccggtttcgcatttttcttggatatgaaacccaacgatttctat-attttgtcaaattct 486
|||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||
Sbjct: 4118 ccggtttcgcatttttcttggaaatgaaacccaacga-ttctataattttgtcaaattct 4060
Query: 487 atattcttgccctctcctanna-ttctat-atttgaagttccgtctctctcggatattgt 544
|||| |||||| ||||||| | |||||| ||| || |||||||||||||||||||||||
Sbjct: 4059 atatccttgccttctcctaaaatttctataattggaggttccgtctctctcggatattgt 4000
Query: 545 -aacatatatt-agcttcatctcggc-aatcttacgaactttgtgaaaagaattgtgt-a 600
|||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||| |
Sbjct: 3999 aaacatatattaagcttcatctcggcaaatcttacgaactttgtgaaaagaa-tgtgtaa 3941
Query: 601 tgcgtattcagaccgactttttcagtcagttgccgatttctgtctttatcccgcaacgta 660
||||||||||||| ||||||| |||||||||||||||||||||||| |||| ||||||||
Sbjct: 3940 tgcgtattcagacggacttttccagtcagttgccgatttctgtcttaatccggcaacgta 3881
Query: 661 ttcattcgggaaatgaggatgttctatttagcagatgcaggatcaaggtcttgggttgct 720
|||| ||||| ||||||||||| ||| ||||||||||||||||| ||||||| |||||||
Sbjct: 3880 ttca-tcggggaatgaggatgtacta-ttagcagatgcaggatc-aggtctt-ggttgct 3825
Query: 721 gagat 725
|||||
Sbjct: 3824 gagat 3820
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6731
Number of Sequences: 1807
Number of extensions: 6731
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)