BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZC01FM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1714 1132 0.0
>3x_Contig1714
Length = 18873
Score = 1132 bits (571), Expect = 0.0
Identities = 648/671 (96%), Gaps = 2/671 (0%)
Strand = Plus / Plus
Query: 84 cttttcgttccaaaccacccagacatcgatcttgttcaaggtcctgacggaaaaacttta 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5388 cttttcgttccaaaccacccagacatcgatcttgttcaaggtcctgacggaaaaacttta 5447
Query: 144 cgaattgttgccgttgatgtgggtatgaagtacaaccaaatccgttgtttcgtcaagcgt 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5448 cgaattgttgccgttgatgtgggtatgaagtacaaccaaatccgttgtttcgtcaagcgt 5507
Query: 204 ggtgttgaattgttggttgttccatgggattacgacttcaccaccgaagaatatgacggt 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5508 ggtgttgaattgttggttgttccatgggattacgacttcaccaccgaagaatatgacggt 5567
Query: 264 ttgttcatctctaatggtcctggtaatccagccattctgcatgaagtgtccgatagattg 323
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 5568 ttgttcatctctaatggtcctggtaatccagccattctgcaggaagtgtccgatagattg 5627
Query: 324 actaaagttttagatgcgaagaagaccccagtcttcggtatctgtttgggtcatcaatta 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5628 actaaagttttagatgcgaagaagaccccagtcttcggtatctgtttgggtcatcaatta 5687
Query: 384 ctagctcgtgcttctggtgcctcaactttgaagatgaagttcggtaacagaggtcacaat 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5688 ctagctcgtgcttctggtgcctcaactttgaagatgaagttcggtaacagaggtcacaat 5747
Query: 444 attccatgtacttagactgtctctggtagatgttatatcacttctcaaaaccatggtttc 503
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5748 attccatgtacttcgactgtctctggtagatgttatatcacttctcaaaaccatggtttc 5807
Query: 504 gctgtagatgaaactagtttgaccaatggctggaaatcattgttcaccaacgctaacgat 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5808 gctgtagatgaaactagtttgaccaatggctggaaatcattgttcaccaacgctaacgat 5867
Query: 564 ggttccaatgaatggatttatcactcagagtttgccttacttcttcgttcaattccatcc 623
|||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 5868 ggttccaatgaagggatttatcactcagag-ttgccttacttctccgttcaattccatcc 5926
Query: 624 tgaatctactccatgttcaagagacactgaattcttggtcgatggctttattaattctgg 683
||||||||||||| || |||||||||||||||||||| |||||| ||| ||| | ||||
Sbjct: 5927 tgaatctactccaggtccaagagacactgaattcttgttcgatgtcttcattcaatctgt 5986
Query: 684 tcta-aattcaagcaaactggggtattgaagcaagttgaatttcccatcggtaacatttg 742
|||| | |||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct: 5987 tctagatttcaagcaaactggtgtattgaagcaagttgaattcccaggcggtaacattga 6046
Query: 743 agagaacttgg 753
||||||||||
Sbjct: 6047 ggagaacttgg 6057
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7513
Number of Sequences: 1807
Number of extensions: 7513
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)