BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZC01RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig787 1116 0.0
>3x_Contig787
Length = 1880
Score = 1116 bits (563), Expect = 0.0
Identities = 740/787 (94%), Gaps = 9/787 (1%)
Strand = Plus / Plus
Query: 44 cttgtaaaatgaaaaaaaatcaatgtccacattataacagctacgaacgactcggtaaag 103
||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||
Sbjct: 826 cttgtaaaatgaaaaaaaatcaaagccaacattataacagctacgaacgactcggtaaag 885
Query: 104 tccagtagtagttttgaggtcaggcctcaaaaattaaccttaatttagttcgagtttatt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 tccagtagtagttttgaggtcaggcctcaaaaattaaccttaatttagttcgagtttatt 945
Query: 164 acaattctaatataactactagtatgcaattctttcattattatttttagctacc-tgaa 222
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 946 acaattctaatataactactagtatgcaattctttcattattatttttagctattgttaa 1005
Query: 223 tcgttttaggtctatatcccagaagaatactgggctgctgtaatccgtaatagattgtat 282
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 acgttttaggtctatatcccagaagaatactgggctgctgtaatccgtaatagattgtat 1065
Query: 283 ctatttattattgtttctattactattttttttggttttcctgtacttacttactctttg 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 ctatttattattgtttctattactattttttttggttttcctgtacttacttactctttg 1125
Query: 343 gtgcaagtttgaatgtcaagatatcgttaacaccttcgtccaccttatcatcttcactga 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1126 gtgcaagtttgaatgtcaagatatcgttaacaccttcgtccaccttatcatcttcactga 1185
Query: 403 ccctgataccaccaacagtttcaatagcagctacagtgacgtcacccataatgtaagtag 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1186 ccctgataccaccaacagtttcaatagcagctacagtgacgtcacccataatgtaagtag 1245
Query: 463 caactttccctaccgtagtccccttcttgaccagaaaacaatcgcggaacacattttcac 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1246 caactttccctaccgtagtccccttcttgaccagaaaacaatcgcggaacacattttcac 1305
Query: 523 cgttcccaccagcgaaagtattgaatgttgcgtaccgtgtacaccgggatcaaatttaaa 582
|||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 1306 cgttcccaccagcgaaggta-tggatgttgcgtaccgtgtacaccgggatcaaatttaaa 1364
Query: 583 gtacttgcagctgcctgttatacttgaacgacacctgtagaaccg-atctggatagtaca 641
|||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 1365 gtacttgcagctgcctgtaatacttgaacgacacctgtagaaccgaatctgtatagtaca 1424
Query: 642 agggctcgtat-acttcaattctctggatcaggttctcatttaacgggttt-acggattg 699
||| ||||||| |||||||||||||| ||||| ||||||| |||||| ||| ||| || |
Sbjct: 1425 aggtctcgtataacttcaattctctgtatcagtttctcatctaacggttttaacgtatcg 1484
Query: 700 gcat-ttttaacggatcaacaaattttgggcctt-tttgtaacggttgaacccctggttt 757
||| || |||| ||||||||||| || ||||| || |||||| ||||||| || ||
Sbjct: 1485 tcatcttcaaacgtatcaacaaattctgtgccttcttcgtaacgtatgaacccttgtttc 1544
Query: 758 ttcaatttacgggggaaaaacttgggggaagggccttgtttgggcacattttaacgtcag 817
|||||||||||| || ||||||| || || || |||||| || |||| |||||||||||
Sbjct: 1545 ttcaatttacggagg-aaaacttcggtgatggcacttgttaggacaca-tttaacgtcag 1602
Query: 818 ggtattt 824
|||||||
Sbjct: 1603 ggtattt 1609
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7200
Number of Sequences: 1807
Number of extensions: 7200
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)