BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZC02FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig214 728 0.0
3x_Contig1485 567 e-161
>3x_Contig214
Length = 1381
Score = 728 bits (367), Expect = 0.0
Identities = 400/409 (97%), Gaps = 2/409 (0%)
Strand = Plus / Plus
Query: 471 tatattcgaagaaggtttatgagtcgatggctgagttacctgtgcctgaaatcaaaaggg 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26 tatattcgaagaaggtttatgagtcgatggctgagttacctgtgcctgaaatcaaaaggg 85
Query: 531 tgactttagaatctttgtatttatcagtaagatccatgggcataaaaaacgttactaagt 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 tgactttagaatctttgtatttatcagtaagatccatgggcataaaaaacgttactaagt 145
Query: 591 ttttacagcaaggcctagacccgccgcctttatcctcgttggaaaaagcagagcatatat 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 146 ttttacagcaaggcctagacccgccgcctttatcctcgttggaaaaagcagagcaaatat 205
Query: 651 taactacgacaggactaattgatgaaacagacaacacgttaacacagctaggtaagtttg 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 taactacgacaggactaattgatgaaacagacaacacgttaacacagctaggtaagtttg 265
Query: 711 tgagcttgctacctgtcatggatagcaaacatggtaaactattgattntttctatcctgt 770
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 266 tgagcttgctacctggcatggatagcaaacatggtaaactattgattttttctatcctgt 325
Query: 771 ttggttgcaccgacattagtgtgttaattgcctcactatttagcgttggaaccctctata 830
|||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 326 ttggttgcaccgacataggtgtgttaattgcctcactattaagcgttggaa-cctctata 384
Query: 831 -ttatcaatgagtatgaaaatagagtcgcaatcagggaaatactngttg 878
||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 385 tttatcaatgagtatgaaaatagagtcgcaatcagggaaatacttgttg 433
>3x_Contig1485
Length = 9830
Score = 567 bits (286), Expect = e-161
Identities = 286/286 (100%)
Strand = Plus / Plus
Query: 86 ttacgcgaaagtaacgatggatctttgattgtttttcttcctggtgttggagaagtgaac 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9529 ttacgcgaaagtaacgatggatctttgattgtttttcttcctggtgttggagaagtgaac 9588
Query: 146 cgctgctgcaaaactttgagcaaagctgattctgactccttgttcgagattttaccattg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9589 cgctgctgcaaaactttgagcaaagctgattctgactccttgttcgagattttaccattg 9648
Query: 206 cattccgctttaactcctgatgatcaaaagagagtcttcaaaaaattcaaatccagaaga 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9649 cattccgctttaactcctgatgatcaaaagagagtcttcaaaaaattcaaatccagaaga 9708
Query: 266 aagataataatttcaactaacattgctgaaacttccatcactgttgatgactgtgttgct 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9709 aagataataatttcaactaacattgctgaaacttccatcactgttgatgactgtgttgct 9768
Query: 326 accattgacaccggtcgtgttaaaacattaaattacgatccttcca 371
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9769 accattgacaccggtcgtgttaaaacattaaattacgatccttcca 9814
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6318
Number of Sequences: 1807
Number of extensions: 6318
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 2
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)