BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZC02RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1303 1477 0.0
>3x_Contig1303
Length = 8112
Score = 1477 bits (745), Expect = 0.0
Identities = 844/871 (96%), Gaps = 5/871 (0%)
Strand = Plus / Minus
Query: 49 gcttaatggatttcaaaatgtgtttatttgagatatatctacatagtaataaataccgac 108
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 4710 gcttaatggatttcaaaatgtgtgtatttgagatatatctacatagtaataaataccgac 4651
Query: 109 acacagatacacatcatataagaaaagacatctttaaatatggaataattgtgggaaaga 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4650 acacagatacacatcatataagaaaagacatctttaaatatggaataattgtgggaaaga 4591
Query: 169 atatgtattgataaagtgaacaatttgtcaacgttacatttattcgtagatccattacaa 228
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 4590 atatgtattgataaagtgaacaatttgtcaacgttacatttattcgtagatccaagacaa 4531
Query: 229 ttggttcaacttgtagtcaataagttcttccttcttgaaccacaagccgatttccttttc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4530 ttggttcaacttgtagtcaataagttcttccttcttgaaccacaagccgatttccttttc 4471
Query: 289 agcagattcaacagagtcagaaccgtgacagacatttctaccaacttcaatggcaaagtc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4470 agcagattcaacagagtcagaaccgtgacagacatttctaccaacttcaatggcaaagtc 4411
Query: 349 acctctgatggtacctggagcagattgcaatgggttggtagcacccaagatagcacgacc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4410 acctctgatggtacctggagcagattgcaatgggttggtagcacccaagatagcacgacc 4351
Query: 409 ttgcttaacaacatccttaccttcccagacagtagctaaaactggaccagaagtcatgta 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4350 ttgcttaacaacatccttaccttcccagacagtagctaaaactggaccagaagtcatgta 4291
Query: 469 agacaatagagatgggaagaatggcttggaaaccaagtcagcgtagtgctccttcaacaa 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4290 agacaatagagatgggaagaatggcttggaaaccaagtcagcgtagtgctccttcaacaa 4231
Query: 529 agcttcggttggagtaaccaacttaataccaaccaatttgtaacctctgtcttcaaaacg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4230 agcttcggttggagtaaccaacttaataccaaccaatttgtaacctctgtcttcaaaacg 4171
Query: 589 agctaagatcttagagatcaaacctctttgaacaccatctggcttgatagcaatgaaagt 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4170 agctaagatcttagagatcaaacctctttgaacaccatctggcttgatagcaatgaaagt 4111
Query: 649 tctttcagtgttagacatttttctcgagttagttaatacgtgattctgtgtacgatcctg 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4110 tctttcagtgttagacatttttctcgagttagttaatacgtgattctgtgtacgatcctg 4051
Query: 709 ctatgaactaagaatcattggggacatatgc-atcgcttaccccagaatgntgaaataaa 767
||||||||||||||||| | || ||||| || |||||| ||||||||| | |||||||||
Sbjct: 4050 ctatgaactaagaatcaat-ggaacataagcaatcgctaaccccagaa-gttgaaataaa 3993
Query: 768 gtgcatggaaagaaagaagttactgcaaatttgaatcaacgaaattgaaatatttctcga 827
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 3992 gtgcatggaaagaagaaagttactgcaaattgaaatcaacgaaattgaaatatttctcga 3933
Query: 828 gagagtccacgaattgagatccgattcatgctcgatgagattggtgcagacg-agtaatg 886
||||| | |||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 3932 gagagccaacgaatgaggatccgattcatgctcgatgagattggtgcagacgaagaaatg 3873
Query: 887 cggggnaaaattg-aaatgagaggaaatttt 916
| ||| ||||| | ||||||||| |||||||
Sbjct: 3872 ccggggaaaatcgaaaatgagagaaaatttt 3842
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7613
Number of Sequences: 1807
Number of extensions: 7613
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)