BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZC03FM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1174 1568 0.0
>3x_Contig1174
Length = 6106
Score = 1568 bits (791), Expect = 0.0
Identities = 841/857 (98%), Gaps = 1/857 (0%)
Strand = Plus / Plus
Query: 88 cagtgaagctgcatgacgacgaagttgccatgttaaaacgccatcggagtgggaaaaaag 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4921 cagtgaagctgcatgacgacgaagttgccatgttaaaacgccatcggagtgggaaaaaag 4980
Query: 148 agaagaaacctaaaaagaagaagaagcggaaggtggctaacgataatccgaacagcatac 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4981 agaagaaacctaaaaagaagaagaagcggaaggtggctaacgataatccgaacagcatac 5040
Query: 208 acttgaagaaagtaggattgagtcccgaattacaagaattcttaaaagtggaagagatgc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5041 acttgaagaaagtaggattgagtcccgaattacaagaattcttaaaagtggaagagatgc 5100
Query: 268 ccagaacacaagtcgttaaatctgtttgggactacattaaggagcatgacctttagaacc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5101 ccagaacacaagtcgttaaatctgtttgggactacattaaggagcatgaccttcagaacc 5160
Query: 328 cggaggaccgaagggaaatcatatgtgatgatgccatgaaacccatttttggtgagaaga 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5161 cggaggaccgaagggaaatcatatgtgatgatgccatgaaacccatttttggtgagaaga 5220
Query: 388 tgaccatgttcacgttgaataaaatactctcgaagcatttattcaaccttgcaaaatcag 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5221 tgaccatgttcacgttgaataaaatactctcgaagcatttattcaaccttgcaaaatcag 5280
Query: 448 aaaaagacgaaatcactgaacagcatagcgacttagagccttgacattaacaatatatat 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5281 aaaaagacgaaatcactgaacagcatagcgacttagagccttgacattaacaatatatat 5340
Query: 508 ataatgctaaatagctcccgccatatcttattgtatcattatcgacaccacgcttatttt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5341 ataatgctaaatagctcccgccatatcttattgtatcattatcgacaccacgcttatttt 5400
Query: 568 actcgtctttatcctctaacttttatgtcttggcatctaattatgtaccatcgatctgta 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5401 actcgtctttatcctctaacttttatgtcttggcatctaattatgtaccatcgatctgta 5460
Query: 628 tctaaattcttgaagagtccgcctttatgaaanctggatctctaataaacaaaacaaata 687
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 5461 tctaaattcttgaagagtccgcctttatgaaacttggatctctaataaacaaaacaaata 5520
Query: 688 cataagaacgaaccttaatagacacaaaccgaccaaaatagcggacagtttcggtaggcg 747
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 5521 cataagaacgaaccttaaaagacacaaaccgaccaaaatagcggacagtttcggtaggcg 5580
Query: 748 atagtatccatgaaccagtttaggatattatncacagattcttcgttttctacccctcca 807
| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 5581 aaggtatccatgaaccagtttaggatattatccacagattcttcgttttctaccccttca 5640
Query: 808 ctgggagaaacgtttgactttgttcccttggacacctgttattctttatgcgatgacctt 867
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5641 ctgggagaaacgtttgactttgttcccttggacactggttattctttatgcgatgacctt 5700
Query: 868 gatctggtatactccaacgtattaaaggtagttttattggcgtaacataatgagcccagt 927
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 5701 gatctggtatactccaacgtattaaaggtagttttatttgcgtacattaatgagcccagg 5760
Query: 928 ttcagaa-gaagtggaa 943
||||||| |||||||||
Sbjct: 5761 ttcagaaggaagtggaa 5777
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9110
Number of Sequences: 1807
Number of extensions: 9110
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)