BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC32ZC03RM1.SCF screened BAC_end
         (933 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1227                                                        1487   0.0  

>3x_Contig1227 
          Length = 6330

 Score = 1487 bits (750), Expect = 0.0
 Identities = 851/873 (97%), Gaps = 11/873 (1%)
 Strand = Plus / Minus

                                                                        
Query: 44   ctttttcttccattcaactaatctagcaaaatcttggttttcttcattacctgaatggga 103
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3377 ctttttcttccattcaactaatctagcaaaatcttggttttcttcattacctgaatggga 3318

                                                                        
Query: 104  tacgtcccaggatcctacagtcattaatccattcaaactaacatgcttggcctccttgat 163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3317 tacgtcccaggatcctacagtcattaatccattcaaactaacatgcttggcctccttgat 3258

                                                                        
Query: 164  aagatattcaacaatcgaatacacctctacttctgcgaacaatccggatttttgttcctc 223
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3257 aagatattcaacaatcgaatacacctctacttctgcgaacaatccggatttttgttcctc 3198

                                                                        
Query: 224  tccagaagtgttgatctgaacattacacgtgatcacgggtgcatccgggttccacttccc 283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3197 tccagaagtgttgatctgaacattacacgtgatcacgggtgcatccgggttccacttccc 3138

                                                                        
Query: 284  tctggcttcttccaacttcttcgccttctttaacgaatcaacggtctctaccgagtaaag 343
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3137 tctggcttcttccaacttcttcgccttctttaacgaatcaacggtctctaccgagtaaag 3078

                                                                        
Query: 344  gttcgcaatcttagccaaatccttgcatttgttactttgcaaaccgccgatgaaatgcca 403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3077 gttcgcaatcttagccaaatccttgcatttgttactttgcaaaccgccgatgaaatgcca 3018

                                                                        
Query: 404  tttaatatcctggggtaaaatctcactcttcgtaatcatctcttgaacgtagttttcccc 463
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3017 tttaatatcctggggtaaaatctcactcttcgtaatcatctcttgaacgtagttttcccc 2958

                                                                        
Query: 464  aaagtgtctcacaccataatcatacaaaattttgatgtctgcagcaggcttatacttgga 523
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2957 aaagtgtctcacaccataatcatacaaaattttgatgtctgcagcaggcttatacttgga 2898

                                                                        
Query: 524  aacagctagtaattcaacgttaacattaccgacttcctgagcagtggcattgatcttatc 583
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2897 aacagctagtaattcaacgttaacattaccgacttcctgagcagtggcattgatcttatc 2838

                                                                        
Query: 584  tttcatcgtctgataagccccaatcagctcttctttcctcacagcatcgtaactgatatc 643
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2837 tttcatcgtctgataagccccaatcagctcttctttcctcacagcatcgtaactgatatc 2778

                                                                        
Query: 644  actagacattcttcttgctactatcagtcccctgcgaatcattcanaagcactanntata 703
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||   |||
Sbjct: 2777 actagacattcttcttgctactatcagtcccctgcgaatcattcaaaagcactata-ata 2719

                                                                        
Query: 704  tgggt-aaaccaaaatttaaagtaagtgctcatcacttaatcttattcagatgttgtgaa 762
            ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2718 tgggtaaaaccaaaatttaaagtaagtgctcatcacttaatctta-tcagatgttgtgaa 2660

                                                                        
Query: 763  tcatcgagcanattcctttatttcttgaagccgtttctgggaaaaaggtg-tgatacttg 821
            |||||||||| |||||||||| ||||||||||| |||| ||||||| ||| |||||||||
Sbjct: 2659 tcatcgagcaaattcctttatatcttgaagccg-ttcttggaaaaaagtgttgatacttg 2601

                                                                        
Query: 822  tcacgtgatgtaggggagctgc-aaaaagac-attcgaaaatgtaa--gagc-aaacgcg 876
            |||||||||||||||||||||| |||||||| | ||||||||| ||   ||| |||||||
Sbjct: 2600 tcacgtgatgtaggggagctgcaaaaaagacaaatcgaaaatggaaagaagcaaaacgcg 2541

                                             
Query: 877  attaaaattcattg-attgaaacgggattggtt 908
            ||||||||||| || ||||||||||||||||||
Sbjct: 2540 attaaaattcaatgaattgaaacgggattggtt 2508


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6560
Number of Sequences: 1807
Number of extensions: 6560
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)