BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC32ZC04FM1.SCF screened BAC_end (958 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1302 940 0.0 >3x_Contig1302 Length = 5215 Score = 940 bits (474), Expect = 0.0 Identities = 613/640 (95%), Gaps = 17/640 (2%) Strand = Plus / Plus Query: 263 aaaaaaaccgaagtgacacaattacataacttcagtatatatttagatcttttgaagtgt 322 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2 aaaaaaaccga-gtgacacaattacataacttcagtatatatttagatcttttgaagtgt 60 Query: 323 ttatctaataaaccattttctagcacaattccattcgaagggtgaacattttttctctcg 382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ttatctaataaaccattttctagcacaattccattcgaagggtgaacattttttctctcg 120 Query: 383 aggcacataccaggcgctcgagcacagatcgattcgtattattcccacgcagggccaaaa 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aggcacataccaggcgctcgagcacagatcgattcgtattattcccacgcagggccaaaa 180 Query: 443 taacaaaaaaaaaaaggaacactacgtacacaagtctgcggtcactttataattatatct 502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 taacaaaaaaaaaaaggaacactacgtacacaagtctgcggtcactttataattatatct 240 Query: 503 cgattcgaaaccaaaatttaagagcaatcttcgaataataaaagctatttcaaatgacag 562 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 cgattcgaaaccaaaatttaagagcaatcttcgaataataaaagctatttcaaatgacag 300 Query: 563 atacattaaatatcgaatctgatgcaaattcctcacgtaagttggttgtacttcgttccg 622 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 atacattaaatatcgaatctgatgcaaattcctcacgtaagttggttgtacttcgttccg 360 Query: 623 aaatggaaagcatgttcagtaaaatcgatactatagacactttcattacggtgtgaagat 682 |||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||| Sbjct: 361 aaatggaaagcatgttcagtaaaatcgatactatagacacttccataacggt-tgaagat 419 Query: 683 ccagaaatgggtagggggaatttagaagaatgcaanagttaaaacaaaatgggacacgtt 742 |||| |||||||||||| | ||||||||| |||| |||||||||||||||||||||| | Sbjct: 420 ccag-aatgggtagggg--aattagaagaaggcaa-agttaaaacaaaatgggacacg-t 474 Query: 743 ttaagtcgatattcaagaaaaaccaaaacttttaacatgaattgcggcgtattcgttcga 802 ||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||| Sbjct: 475 ttaagtcgatattcaag-aaaaccaaaacttttaacatgaatagcggcgta-tcgttcga 532 Query: 803 tttcagaattgatcatttcccgagaatttggtattgaatgggggaatgaacatgccaaaa 862 || ||||| ||||||||||||||| |||| |||||||||| || ||||||||| || || Sbjct: 533 ttccagaa-tgatcatttcccgag-attttgtattgaatgtgg--atgaacatg-cagaa 587 Query: 863 tccccaccttttcggaagacgttcaagaaaccatttgaaa 902 |||||| | |||||| ||||||||||| |||||||||||| Sbjct: 588 tcccca-cgtttcgg-agacgttcaag-aaccatttgaaa 624 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,949 Number of Sequences: 1807 Number of extensions: 12949 Number of successful extensions: 145 Number of sequences better than 1.0e-20: 1 length of query: 958 length of database: 10,358,551 effective HSP length: 16 effective length of query: 942 effective length of database: 10,329,639 effective search space: 9730519938 effective search space used: 9730519938 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)