BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZC04FM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1302 940 0.0
>3x_Contig1302
Length = 5215
Score = 940 bits (474), Expect = 0.0
Identities = 613/640 (95%), Gaps = 17/640 (2%)
Strand = Plus / Plus
Query: 263 aaaaaaaccgaagtgacacaattacataacttcagtatatatttagatcttttgaagtgt 322
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 aaaaaaaccga-gtgacacaattacataacttcagtatatatttagatcttttgaagtgt 60
Query: 323 ttatctaataaaccattttctagcacaattccattcgaagggtgaacattttttctctcg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttatctaataaaccattttctagcacaattccattcgaagggtgaacattttttctctcg 120
Query: 383 aggcacataccaggcgctcgagcacagatcgattcgtattattcccacgcagggccaaaa 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aggcacataccaggcgctcgagcacagatcgattcgtattattcccacgcagggccaaaa 180
Query: 443 taacaaaaaaaaaaaggaacactacgtacacaagtctgcggtcactttataattatatct 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taacaaaaaaaaaaaggaacactacgtacacaagtctgcggtcactttataattatatct 240
Query: 503 cgattcgaaaccaaaatttaagagcaatcttcgaataataaaagctatttcaaatgacag 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cgattcgaaaccaaaatttaagagcaatcttcgaataataaaagctatttcaaatgacag 300
Query: 563 atacattaaatatcgaatctgatgcaaattcctcacgtaagttggttgtacttcgttccg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atacattaaatatcgaatctgatgcaaattcctcacgtaagttggttgtacttcgttccg 360
Query: 623 aaatggaaagcatgttcagtaaaatcgatactatagacactttcattacggtgtgaagat 682
|||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||
Sbjct: 361 aaatggaaagcatgttcagtaaaatcgatactatagacacttccataacggt-tgaagat 419
Query: 683 ccagaaatgggtagggggaatttagaagaatgcaanagttaaaacaaaatgggacacgtt 742
|||| |||||||||||| | ||||||||| |||| |||||||||||||||||||||| |
Sbjct: 420 ccag-aatgggtagggg--aattagaagaaggcaa-agttaaaacaaaatgggacacg-t 474
Query: 743 ttaagtcgatattcaagaaaaaccaaaacttttaacatgaattgcggcgtattcgttcga 802
||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 475 ttaagtcgatattcaag-aaaaccaaaacttttaacatgaatagcggcgta-tcgttcga 532
Query: 803 tttcagaattgatcatttcccgagaatttggtattgaatgggggaatgaacatgccaaaa 862
|| ||||| ||||||||||||||| |||| |||||||||| || ||||||||| || ||
Sbjct: 533 ttccagaa-tgatcatttcccgag-attttgtattgaatgtgg--atgaacatg-cagaa 587
Query: 863 tccccaccttttcggaagacgttcaagaaaccatttgaaa 902
|||||| | |||||| ||||||||||| ||||||||||||
Sbjct: 588 tcccca-cgtttcgg-agacgttcaag-aaccatttgaaa 624
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,949
Number of Sequences: 1807
Number of extensions: 12949
Number of successful extensions: 145
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)