BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZC04RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1697 1437 0.0
>3x_Contig1697
Length = 16220
Score = 1437 bits (725), Expect = 0.0
Identities = 809/828 (97%), Gaps = 8/828 (0%)
Strand = Plus / Minus
Query: 47 gcttatcctatagcattgttaattatgaccaggtgtttgttgttatatccaatagccata 106
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2517 gcttatcctatagcattgttaattaggaccaggtgtttgttgttatatccaatagccata 2458
Query: 107 tccaactactttactctcattttattattatctgtctaaggaagacatcaaagagaaaaa 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2457 tccaactactttactctcattttattattatctgtctaaggaagacatcaaagagaaaaa 2398
Query: 167 aaaaagaattgcattaaacataagtgaataattatgaagaaagaactttggtacatggtg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2397 aaaaagaattgcattaaacataagtgaataattatgaagaaagaactttggtacatggtg 2338
Query: 227 tatttccaccttgtactcttggtgtttatagtatacacaatgtttgatcttatggcttta 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2337 tatttccaccttgtactcttggtgtttatagtatacacaatgtttgatcttatggcttta 2278
Query: 287 accatcgatactacattcaaggacgctttgacaagtacagatttgaatcctccttctact 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2277 accatcgatactacattcaaggacgctttgacaagtacagatttgaatcctccttctact 2218
Query: 347 gctgtgcagcacgctcaattgatcccaaagattatccatcagacgtataagactgaggaa 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2217 gctgtgcagcacgctcaattgatcccaaagattatccatcagacgtataagactgaggaa 2158
Query: 407 attccagaacattggaaggatggtcaacgtaaatgcatcgaattacatccagattataag 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2157 attccagaacattggaaggatggtcaacgtaaatgcatcgaattacatccagattataag 2098
Query: 467 tatttcctctggacggatcaaaagtcaagacaattcattcaagaagagtacccatggttc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2097 tatttcctctggacggatcaaaagtcaagacaattcattcaagaagagtacccatggttc 2038
Query: 527 ttggaaacttttgacaactacaagtacccaattcaaagggctgacgcgataaggtatttc 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2037 ttggaaacttttgacaactacaagtacccaattcaaagggctgacgcgataaggtatttc 1978
Query: 587 gtattatcccatttcggtggtatctatatcgatttggatgacggttgtgagagaaagcta 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1977 gtattatcccatttcggtggtatctatatcgatttggatgacggttgtgagagaaggcta 1918
Query: 647 gatcctttactcacggtaccggcgttcgttagaaagactagccccactggtgtctcgaac 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1917 gatcctttactcacggtaccggcgttcgttagaaagactagccccactggtgtctcgaac 1858
Query: 707 gatgtcatgggtagtgttccaagacatccttttcttctttgaagtgttagaaatcgttga 766
||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||
Sbjct: 1857 gatgtcatgggtagtgttccaagacatcc-tttcttcttgaaagtgttag-aatcgttga 1800
Query: 767 aaagatttgacaacaattggggttatcccattatttaactatcatggctttcgaccgggc 826
|||||| ||||||||||| ||||||||||| |||||||||||||| |||||||||| ||
Sbjct: 1799 aaagatatgacaacaatt-gggttatccca-tatttaactatcat-gctttcgacc-ggt 1744
Query: 827 ccgctgttttttcttctttattttggaaacagtccaaaagatgggggg 874
||||||||| | || ||| |||||||||||| ||||||||||||||
Sbjct: 1743 ccgctgtttat--ctccttaatttggaaacagtacaaaagatgggggg 1698
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9294
Number of Sequences: 1807
Number of extensions: 9294
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)