BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC32ZC05FM1.SCF screened BAC_end
         (938 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1758                                                        1219   0.0  

>3x_Contig1758 
          Length = 25930

 Score = 1219 bits (615), Expect = 0.0
 Identities = 694/713 (97%), Gaps = 7/713 (0%)
 Strand = Plus / Plus

                                                                        
Query: 86   cactatcaagagtcagattctcatcattcatcagatcggcagatcccatagtacctcgtt 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3626 cactatcaagagtcagattctcatcattcatcagatcggcagatcccatagtacctcgtt 3685

                                                                        
Query: 146  taggcttgaagtttttattgattattgtttgattccatatatccataatttgatcaaatg 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3686 taggcttgaagtttttattgattattgtttgattccatatatccataatttgatcaaatg 3745

                                                                        
Query: 206  tactgtcccttgatatgaaagatgcaaacaggaacttgtcatgtaaggtttgtatcgata 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3746 tactgtcccttgatatgaaagatgcaaacaggaacttgtcatgtaaggtttgtatcgata 3805

                                                                        
Query: 266  tggcattaggaaataatacggcagtgttcttttgttcgatctgaactatctctttgaatg 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3806 tggcattaggaaataatacggcagtgttcttttgttcgatctgaactatctctttgaatg 3865

                                                                        
Query: 326  gaactacaacagtcttcatccatcccaaaatattcgagtaaaagcaaatgtgtctatcag 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3866 gaactacaacagtcttcatccatcccaaaatattcgagtaaaagcaaatgtgtctatcag 3925

                                                                        
Query: 386  atatgtataacctaccttgaatgagaatatcttttgataaagcacaactgtaatccgcta 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3926 atatgtataacctaccttgaatgagaatatcttttgataaagcacaactgtaatccgcta 3985

                                                                        
Query: 446  ttaatctttcaattggagatactacggtgtctttaaagattgtatggaaatctgtattac 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3986 ttaatctttcaattggagatactacggtgtctttaaagattgtatggaaatctgtattac 4045

                                                                        
Query: 506  gcttagcacttgcatattcaatgcnctgaagttctggttcttcagtttttctctttatt- 564
            ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| 
Sbjct: 4046 gcttagcacttgcatattcaatgccttgaagttctggttcttcagtttttctctttattg 4105

                                                                        
Query: 565  gaatgtccgaagttgacaggcgtgttggtcctccaggtggttgaacaatatcactggtct 624
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4106 gaatgtccgaagttgacaggcgtgttggtcctccaggtggttgaaaaatatcactggtct 4165

                                                                        
Query: 625  t-gatatgctactcgctcttgtcatgtttctgcccg-aaatgaaattcttaggggtgctg 682
            | |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 4166 tggatatgctactcgctcttgtcatgtttctgcccgaaaatgaatttcttaggggtgctg 4225

                                                                        
Query: 683  taaataatttcgtaactgcagcaagcgacaatgatcttataattaaatctttcaacactt 742
            |||||||||||||| |||||||| ||||||||||||| ||| |||||||| |||||||||
Sbjct: 4226 taaataatttcgtagctgcagcaggcgacaatgatctcatagttaaatctctcaacactt 4285

                                                                 
Query: 743  cgggggcgttttgacccttaccgttcctcggccttaattttttccaatgaagg 795
            | ||||||| ||||||  ||||||||||||||| || ||||||| ||||||||
Sbjct: 4286 c-ggggcgtcttgacc--taccgttcctcggcc-tagttttttcgaatgaagg 4334


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6931
Number of Sequences: 1807
Number of extensions: 6931
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)