BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZC06FM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig342 1257 0.0
>3x_Contig342
Length = 2225
Score = 1257 bits (634), Expect = 0.0
Identities = 704/720 (97%), Gaps = 6/720 (0%)
Strand = Plus / Plus
Query: 86 cgttgggtcaatgttttcatgatgttcattggaaaacgttgaccctcgttagaaattgcg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1415 cgttgggtcaatgttttcatgatgttcattggaaaacgttgaccctcgttagaaattgcg 1474
Query: 146 atcatattatacggaaagcagggtaacgatacatacacagacgcatatagtgagtccaca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1475 atcatattatacggaaagcagggtaacgatacatacacagacgcatatagtgagtccaca 1534
Query: 206 ctatcacgtgattcatattgctaatatatatgcataaatattcagtacaactgagatatc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1535 ctatcacgtgattcatattgctaatatatatgcataaatattcagtacaactgagatatc 1594
Query: 266 acctattctatcatgcgcagtgaactgtttacccgatgggtagtacttgtcttaaacagg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1595 acctattctatcatgcgcagtgaactgtttacccgatgggtagtacttgtcttaaacagg 1654
Query: 326 aggcgggatattgtttgtttggaacaatttctcactggactgttgtaattgtttccagat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1655 aggcgggatattgtttgtttggaacaatttctcactggactgttgtaattgtttccagat 1714
Query: 386 gttttcgtacttatctgtcttagatcccagcgtacgttggaaatacccttgtagtagtag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1715 gttttcgtacttatctgtcttagatcccagcgtacgttggaaatacccttgtagtagtag 1774
Query: 446 cgttatttccgctagacaatcaagtgattcggccatgatattcaagtttttatctgtctt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1775 cgttatttccgctagacaatcaagtgattcggccatgatattcaagtttttatctgtctt 1834
Query: 506 tgtagatagtctgtctgtcagtgatgatgatatagattctattgcctttgtattgaagaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1835 tgtagatagtctgtctgtcagtgatgatgatatagattctattgcctttgtattgaagaa 1894
Query: 566 tttcaagacatcggacaattgacgttcgcaatgtcttgcatactgtgatgggaagtttga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1895 tttcaagacatcggacaattgacgttcgcaatgtcttgcatactgtgatgggaagtttga 1954
Query: 626 ggcgagtaccaantaagttttgatcattttgatggcaagga-tagagcctcgcttgccac 684
|||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1955 ggcgagtaacaataaagttttgatcattttgatggcaaggattagagcctcgcttgccac 2014
Query: 685 gaatgtcttatcacctaagac-acggatttttttgtgaccgggagaagattgcttctcat 743
||||||||||||||||||||| ||||| |||||||||||||| ||| |||||||||||||
Sbjct: 2015 gaatgtcttatcacctaagacaacgga-ttttttgtgaccggtagaggattgcttctcat 2073
Query: 744 ncttttgtttcgtctaatgggaaaagtttgtttcaactccgaggaatcgtgtccaatttg 803
| ||||||||||||||||| || ||||| ||||||| ||| |||||||||||||||||
Sbjct: 2074 cc-tttgtttcgtctaatggagaaggtttg-ttcaact-cgatgaatcgtgtccaatttg 2130
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6596
Number of Sequences: 1807
Number of extensions: 6596
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)