BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZC07FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1754 1435 0.0
>3x_Contig1754
Length = 26052
Score = 1435 bits (724), Expect = 0.0
Identities = 822/846 (97%), Gaps = 7/846 (0%)
Strand = Plus / Plus
Query: 87 cggtagcattgaagaaagagcaaaggtattaaattccttcattgatacagaattgggcaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11388 cggtagcattgaagaaagagcaaaggtattaaattccttcattgatacagaattgggcaa 11447
Query: 147 agtcaaaaggactttagccaaaggagacgtatacaacactaatgaggttaactcgaaatc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11448 agtcaaaaggactttagccaaaggagacgtatacaacactaatgaggttaactcgaaatc 11507
Query: 207 tttcaaaaaggaagacaagattaaggtcaaccttatagcacattctatgggtggattgga 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11508 tttcaaaaaggaagacaagattaaggtcaaccttatagcacattctatgggtggattgga 11567
Query: 267 ttgtagatacctcatctcccatataccgaataaaaatttcgaagtttgcagcctaactac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11568 ttgtagatacctcatctcccatataccgaataaaaatttcgaagtttgcagcctaactac 11627
Query: 327 gatttctacgccacaccatggctctgaaatggctgattatgtggtaggactattcagtga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11628 gatttctacgccacaccatggctctgaaatggctgattatgtggtaggactattcagtga 11687
Query: 387 tatgacacaaacttttgatgtcaatactaaaaagaagctgttacctccagctttttacca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11688 tatgacacaaacttttgatgtcaatactaaaaagaagctgttacctccagctttttacca 11747
Query: 447 attgacgacaacctattgctcacatttcaataaaataacgccggatgaccctagcgtagc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11748 attgacgacaacctattgctcacatttcaataaaataacgccggatgaccctagcgtagc 11807
Query: 507 ttacttcagttatggcgcctgtttcaaaccgcgatggtataacatgttttatatgtcatg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11808 ttacttcagttatggcgcctgtttcaaaccgcgatggtataacatgttttatatgtcatg 11867
Query: 567 gtgcgtgatatcaaatttatctggcggagtacctaacgatggaatggtaagcatacaaag 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11868 gtgcgtgatatcaaatttatctggcggagtacctaacgatggaatggtaagcatacaaag 11927
Query: 627 tgcaagatggggccgttatttggggacgcttgagaacgtcgatcactctgattt-ataaa 685
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 11928 tgcaagatggggccgttatttggggacgcttgagaacgtcgatcactctgatttaataaa 11987
Query: 686 ctggaanaatcgattacag-aagagttncaatatcgtctgcaa-gtactttgaagaaacc 743
|||||| |||||||||||| ||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 11988 ctggaaaaatcgattacagaaagagtttcaatatcgtctgcaaggtactttgaagaaacc 12047
Query: 744 -caaaaccctgatattgacattttgcatttttactttaaagtcacagag-accttgccac 801
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 12048 tcaaaaccctgatattgacattttgcatttttaccttaaagtcacagagaaccttgccaa 12107
Query: 802 cttaggaatttagctacatacaaaatgtctaattagcattaacccgtaaccggatcaagc 861
||||||| ||||||||||||||||||||||||||||||| |||| | ||||| |||||||
Sbjct: 12108 cttaggattttagctacatacaaaatgtctaattagcatcaacctg-aaccgaatcaagc 12166
Query: 862 ctactggttaaaataaccttatggatttatgtgaaccgaatttcgtatgtattgtttttt 921
||||| ||||| ||||| ||| ||| |||||||| || ||||||||||| ||||||||
Sbjct: 12167 atactgcttaaataaacctaatgaattaatgtgaacagagtttcgtatgta-tgtttttt 12225
Query: 922 tttgga 927
||||||
Sbjct: 12226 tttgga 12231
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6436
Number of Sequences: 1807
Number of extensions: 6436
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)