BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZC07RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1281 1417 0.0
>3x_Contig1281
Length = 7825
Score = 1417 bits (715), Expect = 0.0
Identities = 816/845 (96%), Gaps = 4/845 (0%)
Strand = Plus / Plus
Query: 47 cttggagatatccctgttaagata-agcggaaacgatatgaacaaagtcaccaatgtgat 105
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 3978 cttggagatatccctgttaagagatagcggaaacgatatgaacaaagtcaccaatgtgat 4037
Query: 106 aatgacattccgatgaaaaagatctgtatgagaagggaaaaaggcgctcaaaacatgagg 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4038 aatgacattccgatgaaaaagatctgtatgagaagggaaaaaggcgctcaaaacatgagg 4097
Query: 166 tattgaatctccaatgataatgcaaaacccaacgcaaccaccaaatgcaaataggccgtt 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4098 tattgaatctccaatgataatgcaaaacccaacgcaaccaccaaatgcaaataggccgtt 4157
Query: 226 ggatactaaaatcaaaagtcctccccattgacccattgctgtttctacagatgcttgata 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4158 ggatactaaaatcaaaagtcctccccattgacccattgctgtttctacagatgcttgata 4217
Query: 286 agtactcttaccggttaatttcaaattgatcacaatcagacgaatggtccaatcaaccag 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4218 agtactcttaccggttaatttcaaattgatcacaatcagacgaatggtccaatcaaccag 4277
Query: 346 tatggacattaatatggtcgcaaataatccgccgatgattccgcaatttttcatcgcaaa 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4278 tatggacattaatatggtcgcaaataatccgccgatgattccgcaatttttcatcgcaaa 4337
Query: 406 aggttgccctatcactcctgatcctaaaatactattcgccatgttcatgaaagccatgta 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4338 aggttgccctatcactcctgatcctaaaatactattcgccatgttcatgaaagccatgta 4397
Query: 466 cctgttagattttgcctcattagataaatagatgtcatctgttaatgggtcttcttcatt 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4398 cctgttagattttgcctcattagataaatagatgtcatctgttaatgggtcttcttcatt 4457
Query: 526 aacattaaaaatgttttggtcaactgcgctgtcagctgtcttcgcggtgtcatcaaatga 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4458 aacattaaaaatgttttggtcaactgcgctgtcagctgtcttcgcggtgtcatcaaatga 4517
Query: 586 cgttaactccagttcaaacggatttggttcattcttcgattgtttatcagacagagctag 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4518 cgttaactccagttcaaacggatttggttcattcttcgattgtttatcagacagagctag 4577
Query: 646 ttttgcatactttttatcagcggctatctgcatctgnatt-attataattcacaaagtat 704
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 4578 ttttgcatactttttatcagcggctatctgcatctgtattaattataattcacaaagtag 4637
Query: 705 gccataagcggttcaactatcgtgcgctccgtttgctacttcaacctttctacaancata 764
|||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||
Sbjct: 4638 gccataagcggttcaactatcgtgcgctccgtttgctactacaaccttcttacagccata 4697
Query: 765 ttgttttatctaaggcaagaagaaattactgccatttataaaattgggggcttagtcctt 824
|||||||||||||||||||||||||| ||| || ||| ||||| || |||||||| ||
Sbjct: 4698 ttgttttatctaaggcaagaagaaatacttgcaatatat-aaatttggtgcttagtcttt 4756
Query: 825 tgggttatgaataggatgaccaaaattgaccaattacgtgcatttgaaagaaactctcta 884
|||| ||||| |||||||| ||| ||||| ||| ||||||||| || |||||||||||
Sbjct: 4757 tggg-tatgataaggatgacgaaatttgacaaatcacgtgcattgaaatgaaactctcta 4815
Query: 885 catca 889
|||||
Sbjct: 4816 catca 4820
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7161
Number of Sequences: 1807
Number of extensions: 7161
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)