BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZC08FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1802 1080 0.0
>3x_Contig1802
Length = 45229
Score = 1080 bits (545), Expect = 0.0
Identities = 628/649 (96%), Gaps = 7/649 (1%)
Strand = Plus / Minus
Query: 88 tctctgtgtatattcttatctcatcaataataaacacgaagctaagggtacactgcttct 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40633 tctctgtgtatattcttatctcatcaataataaacacgaagctaagggtacactgcttct 40574
Query: 148 aatcacggcatatgttgctcgtagttaccttaaatctcttggcaattgggacgaaaatgg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40573 aatcacggcatatgttgctcgtagttaccttaaatctcttggcaattgggacgaaaatgg 40514
Query: 208 aatgcgggatttttcaataatagtgagaaaggtgctattcttgcggtatttgcattcctc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40513 aatgcgggatttttcaataatagtgagaaaggtgctattcttgcggtatttgcattcctc 40454
Query: 268 gcagttattgcagtaacaatatttgagtcggcgattaagcttccaattattcgggtccaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40453 gcagttattgcagtaacaatatttgagtcggcgattaagcttccaattattcgggtccaa 40394
Query: 328 cttcaagtggtgtgcgagacaaaaagttttgggacctttcaaaaattgtgtaacgatttt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40393 cttcaagtggtgtgcgagacaaaaagttttgggacctttcaaaaattgtgtaacgatttt 40334
Query: 388 cttccaacttcacttgtaaagcattgcatatatatgtgatattattcacttcgaaccagc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40333 cttccaacttcacttgtaaagcattgcatatatatgtgatattattcacttcgaaccagc 40274
Query: 448 caattcgtcagaaaatgttaataccatctangtttcttgttcgggcttcttcataattat 507
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 40273 caattcgtcagaaaatgttaataccatctaggtttcttgttcgggcttcttcataattat 40214
Query: 508 tgc-attcatctcgcctattagtaactcgggtgaaatctattttgtgattataggtttca 566
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40213 tgcaattcatctcgcctattagtaactcgggtgaaatctattttgtgattataggtttca 40154
Query: 567 ccattttcacaagatgatcatgagttcagataattctcanaactcgcttcataaagtttc 626
|||||| ||||||||||||||||| |||||| ||||| ||||||||||||||||||||
Sbjct: 40153 ccatttcaacaagatgatcatgagtcaagataaatctcaaaactcgcttcataaagtttc 40094
Query: 627 tccatttaaagtcttnaaaacttactctgaataaattccctcatctaatttttggggtct 686
||||||| ||||||| ||||||||||||| |||||| |||||||| ||||| | ||||
Sbjct: 40093 tccattt-aagtcttggaaacttactctgattaaatt-cctcatcttatttt--gtgtct 40038
Query: 687 tctttggaaatgatcagctgctatcatttttaacagagaaactcaaaga 735
||||||| | ||||||||||||||||||||| |||||||| ||||||||
Sbjct: 40037 tctttgg-attgatcagctgctatcattttt-acagagaagctcaaaga 39991
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6880
Number of Sequences: 1807
Number of extensions: 6880
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)