BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZC08RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1660 1152 0.0
>3x_Contig1660
Length = 13166
Score = 1152 bits (581), Expect = 0.0
Identities = 694/724 (95%), Gaps = 6/724 (0%)
Strand = Plus / Minus
Query: 49 atcacccaattgcaagcgagcgtattcattgttcagtagatcttttggagtttctttgat 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5774 atcacccaattgcaagcgagcgtattcattgttcagtagatcttttggagtttctttgat 5715
Query: 109 aactaaggtatcgtagtcatagtttcgaatcttctctttattttgctcgatgaatgaata 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5714 aactaaggtatcgtagtcatagtttcgaatcttctctttattttgctcgatgaatgaata 5655
Query: 169 tacaccgcttgtatcagaagactcagcttcgtagcttttcaatccatgagtgtaatttcc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5654 tacaccgcttgtatcagaagactcagcttcgtagcttttcaatccatgagtgtaatttcc 5595
Query: 229 tgcaactacagctttctccttaccatcatatataatgacattgtcgtacactatgtcatc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5594 tgcaactacagctttctccttaccatcatatataatgacattgtcgtacactatgtcatc 5535
Query: 289 tgagtctatgtttagatcattacgtcgttgatgcctagaatgtcttcttaatcggggaaa 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5534 tgagtctatgtttagatcattacgtcgttgatgcctagaatgtcttcttaatcggggaaa 5475
Query: 349 aaatttaggactagattcttggtccctgggtgttgtagcgggtttactttcgggactctg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5474 aaatttaggactagattcttggtccctgggtgttgtagcgggtttactttcgggactctg 5415
Query: 409 aggtagttgcttgggcagtttggtcttaattactggagagctcttctcgcttggactttg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5414 aggtagttgcttgggcagtttggtcttaattactggagagctcttctcgcttggactttg 5355
Query: 469 tgggcttttcaaaggtataatatggccacttgatgggaaaaattcgatgtctactatgaa 528
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 5354 tgggcttttcaaaggtataatagggccacttgatgggaaaaattcgatgtctactatgaa 5295
Query: 529 ttggacatcttttgcaagtgaattc-attcaacagactttc-aacgacatantattctct 586
||||||||||||||||||||||||| ||||||||||||| | ||||||||| ||||||||
Sbjct: 5294 ttggacatcttttgcaagtgaattcaattcaacagacttccaaacgacataatattctct 5235
Query: 587 tagtgcttttagtctcaattttgtgatatttat-aaatcctggtctaggacgtcccttcg 645
||||||||| |||||||||| ||||||| || ||||||||||||||||||||||| ||
Sbjct: 5234 tagtgctttaggtctcaatttgttgatattaataaaatcctggtctaggacgtccctccg 5175
Query: 646 tcgacaacc-aggagatctttcttcaattctgggccttcgcct-aatttaatgaacctca 703
||||||||| || ||||| |||||||| || ||||||||||| ||| |||||||| ||
Sbjct: 5174 tcgacaaccaagaagatcattcttcaa-tcgtggccttcgcctaaatataatgaactcca 5116
Query: 704 tattaagttcccattctgcagctctaacattaatttctttgtttcccctaatggaattgg 763
||||| ||||| ||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 5115 tattagtatcccagtctgcagctctaacattaagttctaagtttcccctaatggaattga 5056
Query: 764 atcg 767
||||
Sbjct: 5055 atcg 5052
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6219
Number of Sequences: 1807
Number of extensions: 6219
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)