BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZC09FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1529 1213 0.0
>3x_Contig1529
Length = 11812
Score = 1213 bits (612), Expect = 0.0
Identities = 789/835 (94%), Gaps = 11/835 (1%)
Strand = Plus / Plus
Query: 86 ataccttcatgaattatttgcacaacgtgacttctccaaatatatcccgaagaagttttt 145
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 2495 ataccttcatgaattatttgcacaacgtgact-ctccaaatatatcccgaagaagttttt 2553
Query: 146 gcagtgactcgtgccggtttttttgctgtatttgctgacgttgatttctacaaagcttcg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2554 gcagtgactcgtgccggtttttttgctgtatttgctgacgttgatttctacaaagcttcg 2613
Query: 206 atctcacagaaactcggttcatcacaaccgctcaattctcagcgtatcagctataatata 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2614 atctcacagaaactcggttcatcacaaccgctcaattctcagcgtatcagctataatata 2673
Query: 266 tgtggtttacaaagtgttttgaccgaaaaggatatactatctgctaacctcgaaattact 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2674 tgtggtttacaaagtgttttgaccgaaaaggatatactatctgctaacctcgaaattact 2733
Query: 326 acgaagtgggtacaagatttgactgaggttgggcctaattaccaccgcctcttgatccga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2734 acgaagtgggtacaagatttgactgaggttgggcctaattaccaccgcctcttgatccga 2793
Query: 386 atgatggatttcattcttcaacagcgcaagcctataatgagccgccaatacgcatttgaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2794 atgatggatttcattcttcaacagcgcaagcctataatgagccgccaatacgcatttgaa 2853
Query: 446 ttggactctaaaaatactattaaattcatgagactgatggtgaaacacattcttacttat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2854 ttggactctaaaaatactattaaattcatgagactgatggtgaaacacattcttacttat 2913
Query: 506 tttccaggcactaccaacattggagatgtgttgggtaaaaaagcataccacatgactgaa 565
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2914 tttccaggcactaccaacattggagatgtgttgggtaaaaaagcatacaacatgactgaa 2973
Query: 566 aaagatagatgatgggctacgaaaataggagtattctttgagatcactcgacattttc-a 624
||||| ||| ||||| |||||||||||||||||||| ||| ||||||||| |||| |
Sbjct: 2974 aaagaaagaagatggctaacgaaaataggagtattcttgaagaacactcgacaatttcaa 3033
Query: 625 ccattttctgcttcgta-tttgagcaatacgttataaaag-aatcattcgagatattct- 681
||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||
Sbjct: 3034 ccattttctgcttcgtattttgagcaatacgttataaaagaaatcattcgagataatcta 3093
Query: 682 accatagatctagtc-aatctattttagttgggcagaaactag-acttgacgcttccctc 739
||||||||||||||| |||||||||||||||| ||||||||| |||||||||| |||||
Sbjct: 3094 accatagatctagtcaaatctattttagttggcaagaaactagaacttgacgctcccctc 3153
Query: 740 gctcgcttttacatagtaatgcagcaggatgctgggac-ctaaatattattaccagaatg 798
|||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||| |||
Sbjct: 3154 gctcgcttttacatagtaatgcagcaggatgctgggacactaaataatattaacaggatg 3213
Query: 799 ttcattcatttgtcatttaagattacggg--atcattgggaggacgatttctttctacca 856
|||| |||||||||||| ||||| ||| | | || || || ||||| || | |||||
Sbjct: 3214 ttcagtcatttgtcattaaagataacgagaaacaataggaagaacgatatcatcttacca 3273
Query: 857 gccaaaat-tttcctaaattttactcagaaaattcggcaaactttccttttaatc 910
|| ||||| |||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 3274 gcaaaaatatttcctaatatttactcagaaaattcggcaaaacttccttttaatc 3328
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6068
Number of Sequences: 1807
Number of extensions: 6068
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)