BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZC09RM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1284 1207 0.0
>3x_Contig1284
Length = 6170
Score = 1207 bits (609), Expect = 0.0
Identities = 685/704 (97%), Gaps = 5/704 (0%)
Strand = Plus / Plus
Query: 49 catggaattcgcggctcggaacagttgatggcgccagaagtctttcaacgtcttaaatac 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2406 catggaattcgcggctcggaacagttgatggcgccagaagtctttcaacgtcttaaatac 2465
Query: 109 gaaggtactccggttgatatgtggtcgttaggaatcatgatgtttgaatttttcaacaac 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2466 gaaggtactccggttgatatgtggtcgttaggaatcatgatgtttgaatttttcaacaac 2525
Query: 169 tcgaataaacctgctttcccgtggaaaattgctaagatagacgatgtatcattcgaggcg 228
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2526 tcgaataaacctgctttcccgtggaaaattgctaagatagacgatgtagcattcgaggcg 2585
Query: 229 tatacaaagaacccaacaacacttaatatttccattgacttatgcatgaaactactttcg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2586 tatacaaagaacccaacaacacttaatatttccattgacttatgcatgaaactactttcg 2645
Query: 289 gtcgatgtaaaacaacgtctgtctattcaggatgtcatcaatgacagtttctttcaagaa 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2646 gtcgatgtaaaacaacgtctgtctattcaggatgtcatcaatgacagtttctttcaagaa 2705
Query: 349 aatcataattccgtcgatggtgtctcagcgcatgcaagaaccaaaagaattttagaaaga 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2706 aatcataattccgtcgatggtgtctcagcgcatgcaagaaccaaaagaattttagaaaga 2765
Query: 409 tcacaaactacatagtcctgtataacattatttctgtctgtttgaaatacctcctcccat 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2766 tcacaaactacatagtcctgtataacattatttctgtctgtttgaaatacctcctcccat 2825
Query: 469 cttcgtctattatcactaaactcaaataattttttacgttgaagtaattacaagtcatgt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2826 cttcgtctattatcactaaactcaaataattttttacgttgaagtaattacaagtcatgt 2885
Query: 529 ttgggagttaggtcatattctncaaggaacaatctgatgggaatagtctctcccttgact 588
|| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 2886 tt-ggagttaggtcatatcctccaaggaacaatctgatgggaatagtctctcccttgact 2944
Query: 589 ggagagccgtccatgatttcatatcttatcggagtcgtatctgacatttgatttnggttc 648
||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||
Sbjct: 2945 ggagagccgtccatgatttcatatcttatcgaagtcgtatctgacaattgattt-ggttc 3003
Query: 649 tgtccccgcatgttttcctttttgattagactcaattccatatgttttactttttattct 708
||| |||||||| ||||| ||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 3004 tgt-cccgcatg-tttcccttttgattagactcaattccatatgttttac-ttttaatct 3060
Query: 709 ggtaaggcaaaaatttattcctccaactattacatcttttaacg 752
|||||| ||||| ||| | ||||||||| |||||||||||||
Sbjct: 3061 ggtaagcagaaaatatatccttccaactataacatcttttaacg 3104
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8920
Number of Sequences: 1807
Number of extensions: 8920
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)