BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZC10RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1021 1400 0.0
>3x_Contig1021
Length = 3847
Score = 1400 bits (706), Expect = 0.0
Identities = 834/862 (96%), Gaps = 11/862 (1%)
Strand = Plus / Minus
Query: 44 gcttggaacaaaatactcgtaatgtaattactattgaatccactccaacttccataaccc 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1890 gcttggaacaaaatactcgtaatgtaattactattgaatccactccaacttccataaccc 1831
Query: 104 aagttgacaaggagcaactcgaaggccaaccagcatcttccacttatcccagtaaagatg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1830 aagttgacaaggagcaactcgaaggccaaccagcatcttccacttatcccagtaaagatg 1771
Query: 164 aggacaatacgaaatctccaattttccctaagatcaacaaatatgaaataccaaaaatca 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1770 aggacaatacgaaatctccaattttccctaagatcaacaaatatgaaataccaaaaatca 1711
Query: 224 actttactaaatctccttcttttgcagaattatttaaggaaatgcgcatggttttagacg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1710 actttactaaatctccttcttttgcagaattatttaaggaaatgcgcatggttttagacg 1651
Query: 284 agtctgatgaagtagtgaattggagaagactatccagtgaagtttcattaaatgaaaaat 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1650 agtctgatgaagtagtgaattggagaagactatccagtgaagtttcattaaatgaaaaat 1591
Query: 344 atgccattcatataccgactgataagaacttaagatccaataagcgactatcagcagcag 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1590 atgccattcatataccgactgataagaacttaagatccaataagcgactatcagcagcag 1531
Query: 404 tagaagtccctgaacaagatgaactgtctttccacaaggatgatgttaaatctgatcaaa 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1530 tagaagtccctgaacaagatgaactgtctttccacaaggatgatgttaaatctgatcaaa 1471
Query: 464 gaacactagatactggagtaactctcactaaaagctcaaaattatctggtaattttaatg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1470 gaacactagatactggagtaactctcactaaaagctcaaaattatctggtaattttaatg 1411
Query: 524 taataaaaacttctccagtcaaaattataactcgaaatgagttaactatgaaaagaactt 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1410 taataaaaacttctccagtcaaaattataactcgaaatgagttaactatgaaaagaactt 1351
Query: 584 caagatcctcgaacctgaacgatgatcctccaagtttctacacggaagatatgagcanaa 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1350 caagatcctcgaacctgaacgatgatcctccaagtttctacacggaagatatgagca-aa 1292
Query: 644 aatgc-agacttgttgagctaacatttcactcgcaggaagatttaccggaaagtcccttt 702
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1291 aatgcaagacttgttgagctaacatttcactcgcaggaagatttaccggaaagtcctttt 1232
Query: 703 tattctccac-aacagaag-aatcaaacctagtgaacacgg-catgaagaaacaaatgt- 758
||| |||||| |||||||| || |||||||||||||||||| |||||||||||||||||
Sbjct: 1231 tatactccacaaacagaagaaaccaaacctagtgaacacggccatgaagaaacaaatgtg 1172
Query: 759 gatcacctagttccaccaggattcaccat-atatttccgacggaaacgaccatta-ccca 816
|||||| |||||||||||| || ||||| | ||| |||||||||||||||| || || |
Sbjct: 1171 gatcacttagttccaccagaatcaaccataaaattaccgacggaaacgaccaatagccaa 1112
Query: 817 gatgtacctggaccattattagatgatttaaagttcagttttcttcc-catgtcatttgg 875
|||| ||||| ||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 1111 gatgaacctgcaccattattagatgatttagagttcag-tttcttccacatgtcatttga 1053
Query: 876 acataccaat-acacttccact 896
|||||||| |||||||||||
Sbjct: 1052 caataccaataacacttccact 1031
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7085
Number of Sequences: 1807
Number of extensions: 7085
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)