BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZC11FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1641 1162 0.0
>3x_Contig1641
Length = 13261
Score = 1162 bits (586), Expect = 0.0
Identities = 665/686 (96%), Gaps = 4/686 (0%)
Strand = Plus / Plus
Query: 89 tatgtaattgagact-caaccgagagaacgaagtcacgtgatggacatctggtgattcca 147
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6705 tatgtaattgagactacaaccgagagaacgaagtcacgtgatggacatctggtgattcca 6764
Query: 148 acgctagatacagcacactgtgtcctaatattgccaaagatcagctagaaatcccaattt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6765 acgctagatacagcacactgtgtcctaatattgccaaagatcagctagaaatcccaattt 6824
Query: 208 caagctgtttattttttcacagatagtatggattggataagtccccccaaatccagatga 267
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6825 caagctgtttagcagtccacagatagtatggattggataagtccccccaaatccagatga 6884
Query: 268 aagccgtagggtccctgctatatcacttctttccattgctcagatgttgaatttggtgaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6885 aagccgtagggtccctgctatatcacttctttccattgctcagatgttgaatttggtgaa 6944
Query: 328 acctttgtcacaagttttcggcaattttgttgttttgaaacgaaaatattaaaaggaaga 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6945 acctttgtcacaagttttcggcaattttgttgttttgaaacgaaaatattaaaaggaaga 7004
Query: 388 gttgtttatttcgccacctcaaagatatcagcggatcaagatagcaattggttggaagaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7005 gttgtttatttcgccacctcaaagatatcagcggatcaagatagcaattggttggaagaa 7064
Query: 448 ggtggtacaataagctgctgtactgtttaattgaagtttgtttctccaagaatttcaata 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7065 ggtggtacaataagctgctgtactgtttaattgaagtttgtttctccaagaatttcaata 7124
Query: 508 cagtcgacacatcctttttattggttgaaaggacggacgaagagactaataacaagcctt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7125 cagtcgacacatcctttttattggttgaaaggacggacgaagagactaataacaagcctt 7184
Query: 568 tttttaatagaaacaatgggtcaaattttgtctaatcctgtaattgataaggaacaacat 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7185 tttttaatagaaacaatgggtcaaattttgtctaatcctgtaattgataaggaacaacat 7244
Query: 628 tctggtagtgatgttttgactgctttttgggtatgtgctatgcaa-gattgcgtttgtct 686
||||||||||||||||||||||||||| || |||||||||||||| ||| |||| |||||
Sbjct: 7245 tctggtagtgatgttttgactgcttttgggttatgtgctatgcaaggatggcgtatgtct 7304
Query: 687 atggaagattcttacattgttgatttgaacatttttgatgatgaagaagaaccttttgcc 746
|||||||||||| ||||||||||||||||||||| |||||||| ||||| | | |||| |
Sbjct: 7305 atggaagattctcacattgttgatttgaacatttctgatgatg-agaaggagcatttggc 7363
Query: 747 gtacttccgtgtggtttgacggacat 772
||||| | |||| |||||||||||||
Sbjct: 7364 gtactactgtgt-gtttgacggacat 7388
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9579
Number of Sequences: 1807
Number of extensions: 9579
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)