BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZC12RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1681 1308 0.0
>3x_Contig1681
Length = 11798
Score = 1308 bits (660), Expect = 0.0
Identities = 811/854 (94%), Gaps = 7/854 (0%)
Strand = Plus / Plus
Query: 45 cttgccggttattggcggtgattcggttcgaagtgctttgttccataagctaccgctaag 104
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 5447 cttgccggttattggcggtgaaacggttcgaagtgctttgttccagaagctaccgctaag 5506
Query: 105 ttacgtatgtaacttatccatgagttgtagaacaagaacattatcttcggtggatgtttg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5507 ttacgtatgtaacttatccatgagttgtagaacaagaacattatcttcggtggatgtttg 5566
Query: 165 tctgaacaagtaatcaagtctctgctttttgttaatggtgagaaattcatgatattttgg 224
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5567 tctgaacaagtaatcaagtctctgctttttgttaatggtgagaaattcatgatattctgg 5626
Query: 225 gtcgtctacattgtagtgaacaattgatagtgagtccacttcggcaaataaaacatattt 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5627 gtcgtctacattgtagtgaacaattgatagtgagtccacttcggcaaataaaacatattt 5686
Query: 285 tttcccatcgtgcgcaagaagctcaaaacagtctctttcacttcttatatcataattcgt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5687 tttcccatcgtgcgcaagaagctcaaaacagtctctttcacttcttatatcataattcgt 5746
Query: 345 tacgaggctcgggtgatcattttcgttacgtttgacgaatttgcctattatttcatttct 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5747 tacgaggctcgggtgatcattttcgttacgtttgacgaatttgcctattatttcatttct 5806
Query: 405 tctaagcggcaccgaatagggttcaaaaagatactgctgcaaagatgtagataggaaatc 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5807 tctaagcggcaccgaatagggttcaaaaagatactgctgcaaagatgtagataggaaatc 5866
Query: 465 ctctttcgttctatctgtttttattgaatggaaattaatcgctaggtccatatggtacca 524
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 5867 ctctttcgttctatctgtttttattgaatggaaattaatcgctaggtccatagggtacca 5926
Query: 525 acgaaacatcgatcgccgaaattttctctctatgacatcgaagtcatggcgtctaatatc 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5927 acgaaacatcgatcgccgaaattttctctctatgacatcgaagtcatggcgtctaatatc 5986
Query: 585 tcttgtttcatacaattgacaaacctttcctaatgtnccaaaaaatgatatttcatctgg 644
||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||
Sbjct: 5987 tcttgtttcatacaattgacaaaccttcctaaatgtcccaaaaaatgatatttcatctgg 6046
Query: 645 atcaattcnncgatttgatattgggtatgtggctgatgatagctttgggtcctggcatat 704
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6047 atcaattccgaatttggatattgggtatgtggctgatgatagctttgggtcctggcatat 6106
Query: 705 cttattgtatctttacactgcngattctttcgactganaaatgtacattaaaa-ctntgg 763
|| |||||||||| ||||| ||||||| ||||||| ||||||||||||||| || ||
Sbjct: 6107 ctcattgtatcttacaactgcggattcttccgactgagaaatgtacattaaaaactctgt 6166
Query: 764 ataatattct-ttgcagata-tttcattggtgctgtttcaaaatctaca-tggcaccccc 820
|||| ||| ||||||||| |||||||| ||||||||||||||||||| ||||||||||
Sbjct: 6167 ataaatatctcttgcagataatttcattgttgctgtttcaaaatctacaatggcaccccc 6226
Query: 821 ttct-gaacacccgttcattttattattcaa-tccttggaagtagcttcagtccaaaacg 878
||| ||||||| |||||| | |||| |||| |||||| |||||||||||||| |||||
Sbjct: 6227 atcttgaacacc-gttcatatcattaatcaaatccttgaaagtagcttcagtcaaaaact 6285
Query: 879 gattttcaaattga 892
||| ||||||||||
Sbjct: 6286 gatattcaaattga 6299
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7154
Number of Sequences: 1807
Number of extensions: 7154
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)