BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZD01FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1748 1445 0.0
>3x_Contig1748
Length = 22566
Score = 1445 bits (729), Expect = 0.0
Identities = 803/821 (97%), Gaps = 5/821 (0%)
Strand = Plus / Minus
Query: 87 tagggtaaggtctaccacctcccattggtggaacatcagagtaatccacttctatcaaat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16232 tagggtaaggtctaccacctcccattggtggaacatcagagtaatccacttctatcaaat 16173
Query: 147 ctggttcgtcttctgtacttgtcaagattctagacaatcttctattaacagcaatttccg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16172 ctggttcgtcttctgtacttgtcaagattctagacaatcttctattaacagcaatttccg 16113
Query: 207 tttccgaagcaggattcgtgaaagttttgaccaacttgagagcaacgtcgtcattatcag 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16112 tttccgaagcaggattcgtgaaagttttgaccaacttgagagcaacgtcgtcattatcag 16053
Query: 267 cagtaccactgccagatgggcccttttccaaatcgtcaccgcggaacggtctatcagcac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16052 cagtaccactgccagatgggcccttttccaaatcgtcaccgcggaacggtctatcagcac 15993
Query: 327 cgacatctgatgacgacgctgtggagctgctatatgacacattatcatttcctgatgcgc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15992 cgacatctgatgacgacgctgtggagctgctatatgacacattatcatttcctgatgcgc 15933
Query: 387 gagcctgtacggcgtgctctgaagcaccactgtcaagattagttgacatgatgatatata 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15932 gagcctgtacggcgtgctctgaagcaccactgtcaagattagttgacatgatgatatata 15873
Query: 447 tggtaggagatgtctttttttacctgagcttgtctccttctaattcctcgaaacgttaga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15872 tggtaggagatgtctttttttacctgagcttgtctccttctaattcctcgaaacgttaga 15813
Query: 507 aacttaatgcttcatgccgtaaccccccccgtatctcttcaagaattaatattcatcggg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15812 aacttaatgcttcatgccgtaaccccccccgtatctcttcaagaattaatattcatcggg 15753
Query: 567 cacatatatatatatatatatatatgtataatataggcactgactttttttggtaatgac 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15752 cacatatatatatatatatatatatgtataatataggcactgactttttttggtaatgac 15693
Query: 627 attgaaaaatgcaaattataacaaacggttgttgacatcttcgacagcaagacatggaaa 686
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15692 attgaaaaatgcaaataataacaaacggttgttgacatcttcgacagcaagacatggaaa 15633
Query: 687 gtatagaaaaattgaaaaaaaaaagcgcaacacagaaagttctcgttaaaaccccatgga 746
||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||
Sbjct: 15632 gtatagaaaaattgaaaaaaaaaggcgcaacacag-aaggtctcgttaaaaccccatgga 15574
Query: 747 tatcagcagaaaaaaaaggttttgatttagaatgcgatatgtgtcagaagggtttaagcc 806
||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||
Sbjct: 15573 tatcagcagaaaaaaaaggttttgattagaaatgcgatatgtgtcag-agggttttagcc 15515
Query: 807 ttgtaccgtgggatgatatacgatgaaaactatggcagtatttagacaattcacgttaag 866
||| |||| |||||||||||||||||| ||||||||||| |||||||| ||||||| ||
Sbjct: 15514 ttg-accggtggatgatatacgatgaaatctatggcagta-ttagacaaatcacgtttag 15457
Query: 867 gaaac-taactgtttatcccgaatattcctatggatcaaac 906
||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 15456 gaaacgtaactgtttataccgaatattcctatggatcaaac 15416
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,193
Number of Sequences: 1807
Number of extensions: 14193
Number of successful extensions: 2641
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)