BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZD01RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1673 1292 0.0
>3x_Contig1673
Length = 13723
Score = 1292 bits (652), Expect = 0.0
Identities = 745/765 (97%), Gaps = 11/765 (1%)
Strand = Plus / Plus
Query: 51 gcttagtatcaattttatagtcctgaagtttttctatcaaaacttttttctcctctcttt 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8121 gcttagtatcaattttatagtcctgaagtttttctatcaaaacttttttctcctctcttt 8180
Query: 111 tcaattgatgctcgatgaacttctctaacctttttttcttcgtcctagagaccttcgttt 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8181 tcaattgatgctcgatgaacttctctaacctttttttcttcgtcctagagaccttcgttt 8240
Query: 171 ccttaggtgtgaatagctcttccaatttacgctttttctcttgtttctcttcctccgtca 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8241 ccttaggtgtgaatagctcttccaatttacgctttttctcttgtttctcttcctccgtca 8300
Query: 231 tgggtttcaatacagcagcgttcgtatcttcctgatgatcgggtgattcatgatgttcat 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8301 tgggtttcaatacagcagcgttcgtatcttcctgatgatcgggtgattcatgatgttcat 8360
Query: 291 cttcagatgaattaccttcttcagaatcagcatcggaagaattttcaagtgcacgggtga 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8361 cttcagatgaattaccttcttcagaatcagcatcggaagaattttcaagtgcacgggtga 8420
Query: 351 actgcctattccttactctcttcaactccttcaacttagacatctgacccgcgcgtgctt 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8421 actgcctattccttactctcttcaactccttcaacttagacatctgacccgcgcgtgctt 8480
Query: 411 tctcattccagcgcttcctataggtacccatgtttgttgttcaattttttgaccgtttaa 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8481 tctcattccagcgcttcctataggtacccatgtttgttgttcaattttttgaccgtttaa 8540
Query: 471 cgtgcgaggtacttctcttgactgttaatgtcacagaggcctataacattcagactacca 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8541 cgtgcgaggtacttctcttgactgttaatgtcacagaggcctataacattcagactacca 8600
Query: 531 gcctgttatcaacgagattttgatatatagatgcaggtgagcttggatgcgatgagatgc 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8601 gcctgttatcaacgagattttgatatatagatgcaggtgagcttggatgcgatgagatgc 8660
Query: 591 gatgagcttttaagctttttctgccatatagg-agatgaaaaaaaaaaa---gaagtcgc 646
|||||||||| ||||||||||||||||| ||| |||||||||||||||| |||||||
Sbjct: 8661 gatgagctttaaagctttttctgccataaaggaagatgaaaaaaaaaaaaagaaagtcgc 8720
Query: 647 tttc-acgttttgataattc-aagatataggcantcttttgtacattt-agttcaaagag 703
|||| ||||||||||||||| |||||||||||| |||||||||||||| |||||||||||
Sbjct: 8721 tttcaacgttttgataattcaaagatataggcaatcttttgtacatttaagttcaaagag 8780
Query: 704 cagttgatttcacccgttattggggttttcaagtactcattaaattggggaaacgctgat 763
||||||||| || |||||| | |||||||||||||||||||||||| |||||||| ||||
Sbjct: 8781 cagttgattcca-ccgttaattgggttttcaagtactcattaaatttgggaaacg-tgat 8838
Query: 764 aattcgcatttttttgcctctttttcaaatcattaatgaatggtt 808
|| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 8839 aaatcgca-ttttttgcctc-ttttcaaatcattaatgaatggtt 8881
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,824
Number of Sequences: 1807
Number of extensions: 13824
Number of successful extensions: 153
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)