BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZD02FM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig523 1465 0.0
>3x_Contig523
Length = 2310
Score = 1465 bits (739), Expect = 0.0
Identities = 783/791 (98%), Gaps = 5/791 (0%)
Strand = Plus / Plus
Query: 95 gggacccatccatcttagagctttattttggtattgtaagataagttttggtatatttct 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 gggacccatccatcttagagctttattttggtattgtaagataagttttggtatatttct 136
Query: 155 tttattcgagtagttcgatttgctagggtcttcggattgtatttcataatctctttccgg 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 tttattcgagtagttcgatttgctagggtcttcggattgtatttcataatctctttccgg 196
Query: 215 ttccaaatggttatggatagaaaatatgcttctttccacaccaagtggtgacacaagaca 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ttccaaatggttatggatagaaaatatgcttctttccacaccaagtggtgacacaagaca 256
Query: 275 tagtttatggacgttatctgggtatttcaaagagtatttgaaagttagatagccaccgta 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tagtttatggacgttatctgggtatttcaaagagtatttgaaagttagatagccaccgta 316
Query: 335 cgagtggccaaccaaattaatcttggacaatttgttttcctttctccatttttccaaggc 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cgagtggccaaccaaattaatcttggacaatttgttttcctttctccatttttccaaggc 376
Query: 395 atcgacgtaatagtcctcataatgagccaaatgtttcttatatttctcttcatcaaccgg 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atcgacgtaatagtcctcataatgagccaaatgtttcttatatttctcttcatcaaccgg 436
Query: 455 attctgcaaacggaaatactgacccttcacagtttcgttgaactctactctgtcaggttt 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 attctgcaaacggaaatactgacccttcacagtttcgttgaactctactctgtcaggttt 496
Query: 515 ttgcatagagtctactgagagaggtaactctttcgacaacccgttcccgggcaaatctac 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttgcatagagtctactgagagaggtaactctttcgacaacccgttcccgggcaaatctac 556
Query: 575 agcgtagacatctttcaaggacaacgaaagctgctcgaaattcctgaaaaatgtcattga 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agcgtagacatctttcaaggacaacgaaagctgctcgaaattcctgaaaaatgtcattga 616
Query: 635 cgatgcagcatacccatggatcatcaaagtaggtacccccactgcttttgccgtaggatt 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cgatgcagcatacccatggatcatcaaagtaggtacccccactgcttttgccgtaggatt 676
Query: 695 cgagatccgccattggttgatctcgcccaatagcatcggattttcgacagatatcccgga 754
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 677 cgagatccgccattggttgatctcgcccaatagcatcgaattttcgacagatatcccgga 736
Query: 755 atcaaactgcaattggtccataagattctggtgccaatgcttcaaactacccttttgcat 814
|||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||
Sbjct: 737 atcaaactgcaattggtccataagattctgttgcaaatgcttcaaactaccc-tttgcat 795
Query: 815 cgtaaatttaaactattccaccactcgtttccagccagaaacgcttcaaagagagcttcg 874
||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||
Sbjct: 796 cgt-aatttaaactattccaccact-gtttccagccag-aacgcttcaaagagagc-tcg 851
Query: 875 tctggttgcga 885
|||||||||||
Sbjct: 852 tctggttgcga 862
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6243
Number of Sequences: 1807
Number of extensions: 6243
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)