BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZD03FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1326 876 0.0
3x_Contig551 509 e-144
>3x_Contig1326
Length = 4875
Score = 876 bits (442), Expect = 0.0
Identities = 564/589 (95%), Gaps = 12/589 (2%)
Strand = Plus / Plus
Query: 315 tcatcaaatctat-cgtcac-ggaaagccaagcaagcacattggatgtaggcaaaaatgt 372
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 6 tcatcaaatctattcgtcacaggaaagccaagcaagcacattggatgtaggcaaaaatgt 65
Query: 373 tttctggatttaattccttagccttatcgaaatcggcaccagcttctttgaagttttcaa 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 tttctggatttaattccttagccttatcgaaatcggcaccagcttctttgaagttttcaa 125
Query: 433 caacaaaatgcatttgaccgcgatgatagtaaacagcagagcagtttggatctaattcta 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 caacaaaatgcatttgaccgcgatgatagtaaacagcagagcagtttggatctaattcta 185
Query: 493 aagctttgtcaaagtattccttgtattggttggcttcacccttgtcagccataatcaaag 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 aagctttgtcaaagtattccttgtattggttggcttcacccttgtcagccataatcaaag 245
Query: 553 ccatgtagatgtaagtagaaagtcttgggttcaaagacaacgattcttccaggttaatat 612
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ccatgtagatgtaagtagaaggtcttgggttcaaagacaacgattcttccaggttaatat 305
Query: 613 gcgcggtatttggatcatttttgaagaaacttg-aaatacccacatgttcgaaagcgatg 671
|||||||| ||||||||||||||||| |||||| ||||||||||||||||||| ||||||
Sbjct: 306 gcgcggtaattggatcatttttgaag-aacttgaaaatacccacatgttcgaaggcgatg 364
Query: 672 gcagcctttctc-tcaaagattcattatctggagaagattctaattctttcttgtataac 730
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gcagccttcttcttcaaagattcattatctggagaagattctaattctttcttgtataac 424
Query: 731 tcggcagccttaggtgaattcttcatcagccaattcgtaacatccggttttgacatttgt 790
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 425 tcggcagcctt-ggtgaattcttcatcagccaattcgtaacatccgg-tttgacatttg- 481
Query: 791 tacaagtttttccaaacctttttttcaactcaacatctgcttnaattttcgccatcgtaa 850
|||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 482 tacaag-ttttccaaacc-ttttttcaactcaacatctgcttc-attttcgccatcgtaa 538
Query: 851 tcatccaaaggaattttcaggtttgaagatccccgagaatgaagccaaa 899
||||| ||| ||| ||||||| |||||||| || ||||||| ||||||
Sbjct: 539 tcatcgaaa-gaagtttcagggttgaagataccgaagaatgatgccaaa 586
>3x_Contig551
Length = 2723
Score = 509 bits (257), Expect = e-144
Identities = 262/264 (99%)
Strand = Plus / Plus
Query: 85 caacgaagttttcaacggttgggtttctaatcaaagcagtggccttaccaatcattggag 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2460 caacgaagttttcaacggttgggtttctaatcaaagcagtggccttaccaatcattggag 2519
Query: 145 caataccgacgtgaatacctggtaaagcatcttccaacttgatggcaatatcgtattgct 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2520 caataccgacgtgaatacctggtaaagcatcttccaacttgatggcaatatcgtattgct 2579
Query: 205 tgatggcagcatctatagagttcttagcagccaaaatttcggcataaaagtttggaactt 264
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2580 tgatggcagcatctagagagttcttagcagccaaaatttcggcatanaagtttggaactt 2639
Query: 265 ctggagcagttgggaactttcttctggcttcgctgaacaaagtttcacaatcatcaaatc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2640 ctggagcagttgggaactttcttctggcttcgctgaacaaagtttcacaatcatcaaatc 2699
Query: 325 tatcgtcacggaaagccaagcaag 348
||||||||||||||||||||||||
Sbjct: 2700 tatcgtcacggaaagccaagcaag 2723
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7570
Number of Sequences: 1807
Number of extensions: 7570
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 2
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)