BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZD03RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig640 1439 0.0
>3x_Contig640
Length = 3164
Score = 1439 bits (726), Expect = 0.0
Identities = 857/893 (95%), Gaps = 6/893 (0%)
Strand = Plus / Minus
Query: 44 gcttgaacaacaacacctctaccataagtatccacagagtctaaaagaccagtcaaatct 103
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1127 gcttgaacaacaacacctctaccagaagtatccacagagtctaaaagaccagtcaaatct 1068
Query: 104 tccatgacgtcatccatcatttcttcttcatcatcgtctggacctacaactaataatcgg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1067 tccatgacgtcatccatcatttcttcttcatcatcgtctggacctacaactaataatcgg 1008
Query: 164 gaaccagaaacagccttttccaaatcatttgcagcaatttttacacctagagcagccttg 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 gaaccagaaacagccttttccaaatcatttgcagcaatttttacacctagagcagccttg 948
Query: 224 acttctttgtgatgttgatattcagacttcaaacgtaactcacgtaagggttgaggtgtc 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947 acttctttgtgatgttgatattcagacttcaaacgtaactcacgtaagggttgaggtgtc 888
Query: 284 aacaaggctctgatattcgtcacaatcggaccgttcataccacataaaacgattctgtca 343
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 887 aacaaggctctgatattcgtcacaatcggaccgttcataccacataaaaagattctgtaa 828
Query: 344 ccctctcttaagtaaccattagatagaataacatcgatagtggtaccgaaaccttcaaca 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 ccctctcttaagtaaccattagatagaataacatcgatagtggtaccgaaaccttcaaca 768
Query: 404 accttcacttcaagaattgtagcttcaacgtgagacaaatatttcaattgcttagacatt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 accttcacttcaagaattgtagcttcaacgtgagacaaatatttcaattgcttagacatt 708
Query: 464 ctcttttgagtcaattctaatagcaaccacaacatatcatgaacaccttcacctgtaacg 523
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 707 ctcttttgagtcaattctaatagcaaccacaacaaatcaggaacaccttcacctgtaacg 648
Query: 524 gcagatgttggaacaatagagacgtatttggctaggttgttgttttggaaatacaattct 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 gcagatgttggaacaatagagacgtatttggctaggttgttgttttggaaatacaattct 588
Query: 584 gagttcaaaccttgttcagcaagagcgaacttgatgttgtcaagtctagtttggaaactc 643
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 587 gagttcaaaccttgttcagcaagagcgactttgatgttgtcaagtctagtttgg-aactc 529
Query: 644 ttgctt-actgctcgttcttgtttgtcaaaagagtctctgaaagagttgtttggtgttat 702
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 528 ttgcttaactgctcgttcttgtttgtcaaaggagtctctgaaagagttgtttggtgtaat 469
Query: 703 tacccagtcgtacaatctatcgatcttattcaaggc-acgatgaaaggagcctttctgtc 761
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 468 tacccagtcgtacaatctatcgatcttattcaaggcaacgatgaaaggagcctttctgtc 409
Query: 762 tctcaataatctgatggattcaatggtttgtggttctaaaccatgcatgatttcaatacc 821
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
Sbjct: 408 tctcaataatctgatggattcaatggtttgttgttctaaaccatgcatgatatcaataac 349
Query: 822 taagatgccgatgtt-cccaaagaaggaccttttggacccaagttggntaaagattcggg 880
||||||| ||||||| | |||||| | |||| | | || |||||||| ||||||||| |
Sbjct: 348 taagatggcgatgttacacaaagaggaacctctggaacgcaagttggtaaaagattcgtg 289
Query: 881 acccggggt-ttaatgactaacaaacc-gggacttcgaaagttggtttttcat 931
||| || || | ||||||||||||||| ||||| ||||| ||| ||| |||||
Sbjct: 288 acctggtgtatcaatgactaacaaacctgggacatcgaaggtttgttcttcat 236
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7296
Number of Sequences: 1807
Number of extensions: 7296
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)