BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZD04FM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1709 1340 0.0
>3x_Contig1709
Length = 16948
Score = 1340 bits (676), Expect = 0.0
Identities = 725/738 (98%), Gaps = 3/738 (0%)
Strand = Plus / Minus
Query: 87 cagcagccaagaatttccagttggactcagggtcattaggatcgacaaagcctgttggat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8820 cagcagccaagaatttccagttggactcagggtcattaggatcgacaaagcctgttggat 8761
Query: 147 gaacctgaatttggtccatatcaattaatttagcacctagcctttctagtaaaacctgcc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8760 gaacctgaatttggtccatatcaattaatttagcacctagcctttctagtaaaacctgcc 8701
Query: 207 cttcacccaaagtctgatcaccgtttgtggttggtaaatcgactagatgtggggcatatt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8700 cttcacccaaagtctgatcaccgtttgtggttggtaaatcgactagatgtggggcatatt 8641
Query: 267 tttccaacaacttcttgttgaaaccaaatccacctgtacagaacacgacattgtttgttt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8640 tttccaacaacttcttgttgaaaccaaatccacctgtacagaacacgacattgtttgttt 8581
Query: 327 caatggaatgtgttccttctgaatcctcgtagactacaccatttaccttattattctcat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8580 caatggaatgtgttccttctgaatcctcgtagactacaccatttaccttattattctcat 8521
Query: 387 caagtttgacatcaattaccttgctattcaattggatcttgacgagatctgcgccatacg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8520 caagtttgacatcaattaccttgctattcaattggatcttgacgagatctgcgccatacg 8461
Query: 447 attgtaacgattttttcaaagtgtctacaatctggaaaccgggtggcagtttcccgctag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8460 attgtaacgattttttcaaagtgtctacaatctggaaaccgggtggcagtttcccgctag 8401
Query: 507 atctatgggttcttgaaaccgaatgaccacccaattgngcaagtttatccaacggaatct 566
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 8400 atctatgggttcttgaaaccgaatgaccacccaattgggcaagtttatccaacggaatct 8341
Query: 567 gatgctcagtttgtagccaagatatagcattcgctgaatctttggccaacttctncatca 626
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 8340 gatgctcagtttgtagccaagaaatagcattcgctgaatctttggccaacttctccatca 8281
Query: 627 atgtcacaataccttttccctctagcagatttgatcgtatcatctgcaaataactcccga 686
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 8280 atgtcacaatacc-tttccctctagcagatttgatcgtatcatctgcaaataactccgga 8222
Query: 687 ttatcaattatctttaattttttcttgagtgtcggtaacagcaccattaataccgcttga 746
|||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 8221 ttatcaattatc-ttaagtttttcttgagtgtcggtaccagcaccattaataccgcttga 8163
Query: 747 cgccttggatcgaattacccacaatgctgcctgtcttttccaataaaactatgggaatat 806
|||||| |||||||||||| ||||||| ||||||||||||||||||||||| |||||||
Sbjct: 8162 cgcctt-gatcgaattaccaccaatgcttcctgtcttttccaataaaactattggaatat 8104
Query: 807 taaacttcactagttggg 824
||||||||||||||||||
Sbjct: 8103 taaacttcactagttggg 8086
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6524
Number of Sequences: 1807
Number of extensions: 6524
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)