BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZD04RM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1673 1255 0.0
>3x_Contig1673
Length = 13723
Score = 1255 bits (633), Expect = 0.0
Identities = 669/677 (98%), Gaps = 3/677 (0%)
Strand = Plus / Minus
Query: 44 gctttgaacatcaatcaactaaaat-attttacagaat-acacagtccgcggcctcattg 101
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 12169 gctttgaacatcaatcaactaaaatcattttacagaattacacagtccgcggcctcattg 12110
Query: 102 caaaacttaccagaaactaccccagatgaatcactttttaaattgcaattgagaaggtac 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12109 caaaacttaccagaaactaccccagatgaatcactttttaaattgcaattgagaaggtac 12050
Query: 162 caaaagcaaagtttgtcatggatgctcaaaagagaatacgagtatagtcatttatcagag 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12049 caaaagcaaagtttgtcatggatgctcaaaagagaatacgagtatagtcatttatcagag 11990
Query: 222 aaagccgcagaagtgtctattgatgggaatagtatgaatccactatggaagaaattccgc 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11989 aaagccgcagaagtgtctattgatgggaatagtatgaatccactatggaagaaattccgc 11930
Query: 282 tggccatctaattcaaaacaagggactccaaaccacgaagatgattgcttcttttatgct 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11929 tggccatctaattcaaaacaagggactccaaaccacgaagatgattgcttcttttatgct 11870
Query: 342 aatttatacactggtgagttttctatcgagaagccggtcattaagacgataatcaatgga 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11869 aatttatacactggtgagttttctatcgagaagccggtcattaagacgataatcaatgga 11810
Query: 402 ggtattttggcggatgagatgggtctagggaaaacaatatcagctttagcattgatttgt 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11809 ggtattttggcggatgagatgggtctagggaaaacaatatcagctttagcattgatttgt 11750
Query: 462 actgctagctatgatgaggctcatgaaaagaaaattgagtcaaccaaaaagccttctatg 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11749 actgctagctatgatgaggctcatgaaaagaaaattgagtcaaccaaaaagccttctatg 11690
Query: 522 aaggagatgtcttctcaagtggatttctctccattacgccattctcaacataagcatgac 581
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 11689 aaggagatgtcttctcaagtggattcctctccattacgccattctcaacataagcatgac 11630
Query: 582 acttatgcttacaggacgacgttgatagtagtgccgatgtccttattgaatcagtggcaa 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11629 acttatgcttacaggacgacgttgatagtagtgccgatgtccttattgaatcagtggcaa 11570
Query: 642 tcagaattccaaaaggccaacaaggacctcaaaaaaacgttgtgaaatttattacgggaa 701
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 11569 tcagaattcgaaaaggccaacaaggacctc-aaaaaacgttgtgaaatttattacgggaa 11511
Query: 702 ttatatttaagaattaa 718
| ||||| |||| ||||
Sbjct: 11510 taatattaaagatttaa 11494
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7205
Number of Sequences: 1807
Number of extensions: 7205
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)