BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZD05FM1.SCF screened BAC_end
(833 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig858 492 e-139
>3x_Contig858
Length = 3029
Score = 492 bits (248), Expect = e-139
Identities = 258/260 (99%), Gaps = 1/260 (0%)
Strand = Plus / Minus
Query: 87 atcaaaaggataaaccctccgatgaactacttgaaagttaatgtaaatgcagtcattccc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1264 atcaaaaggataaaccctccgatgaactacttgaaagttaatgtaaatgcagtcattccc 1205
Query: 147 tcttattctcatacccgaagctactgtcttggtttttcaatgaacttcatatgaagttga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1204 tcttattctcatacccgaagctactgtcttggtttttcaatgaacttcatatgaagttga 1145
Query: 207 gtatatagataaccataaaatcttttagaattaacaactatagctgctaaagttgtccac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1144 gtatatagataaccataaaatcttttagaattaacaactatagctgctaaagttgtccac 1085
Query: 267 aattactactgtaatattatcattgtcatgtgtaaaactcaacttgttttgtgaattaca 326
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 1084 aattactactgtaatattatcattgtcatgtgtaaaactcaacttg-tttgtgatttaca 1026
Query: 327 ataaaaatctcgttagtttg 346
||||||||||||||||||||
Sbjct: 1025 ataaaaatctcgttagtttg 1006
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 71,329
Number of Sequences: 1807
Number of extensions: 71329
Number of successful extensions: 11439
Number of sequences better than 1.0e-20: 1
length of query: 833
length of database: 10,358,551
effective HSP length: 16
effective length of query: 817
effective length of database: 10,329,639
effective search space: 8439315063
effective search space used: 8439315063
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)