BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZD05RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1550 1207 0.0
>3x_Contig1550
Length = 10740
Score = 1207 bits (609), Expect = 0.0
Identities = 724/749 (96%), Gaps = 10/749 (1%)
Strand = Plus / Minus
Query: 47 cttagcgagttcgcgttggatgaagaagatgaactagaagaaggtgacgacgaggcaagc 106
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 5097 cttagcgagttcgcgttggaggaagaagatgaactagaagaaggtgacgacgaggcaagc 5038
Query: 107 gtcggggaacgtttggagtatcaaaaggctaaatctactgccacattcagatcacggaca 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5037 gtcggggaacgtttggagtatcaaaaggctaaatctactgccacattcagatcacggaca 4978
Query: 167 cgatctactccaccactagtatcaacacctctgagaccaaacactccaccttccccctcg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4977 cgatctactccaccactagtatcaacacctctgagaccaaacactccaccttccccctcg 4918
Query: 227 gctgaatccacatcatctacccaaaaatcttttggtagctctcgaactccacaagagaaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4917 gctgaatccacatcatctacccaaaaatcttttggtagctctcgaactccacaagagaaa 4858
Query: 287 atacagcacgtcttacctccttccctaacgccatctcttccctcagctcaaaggctgaaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4857 atacagcacgtcttacctccttccctaacgccatctcttccctcagctcaaaggctgaaa 4798
Query: 347 aaatctcatagatattccatctcgtcctcctcgaagggatcaacggcctcatcgtcttca 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4797 aaatctcatagatattccatctcgtcctcctcgaagggatcaacggcctcatcgtcttca 4738
Query: 407 tcagtgtcgtctcaatcaccgacagttaatagctcatcacaaaagttctcgaaattggta 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4737 tcagtgtcgtctcaatcaccgacagttaatagctcatcacaaaagttctcgaaattggta 4678
Query: 467 cacagactaaaattcggcagaagtagtagcagcagtggtggccaaagtggtcctcaatca 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4677 cacagactaaaattcggcagaagtagtagcagcagtggtggccaaagtggtcctcaatca 4618
Query: 527 tggcaatcctaaactggttctatttccccacggtatct-aaaaaaataaaagaattac-a 584
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 4617 tggcaatcctaaactggttctatttccccacggtatctaaaaaaaataaaagaattacaa 4558
Query: 585 acagatcagcacctgca-tttaaatccctgagcacagtgtcgaac-aacagaaaa-tcgt 641
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 4557 acagatcagcacctgcattttaaatccctgagcacagtgtcgaacaaacagaaaattcgt 4498
Query: 642 ttctgc-atattaaaaactgattacttacaaaaatactaata-cacacactgtgtaaaca 699
|||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 4497 ttctgcaatattaaaacctgattacttacaaaaatactaataccacacactgtgtagaca 4438
Query: 700 tgccgtaggtcctggtaatttttcttttctactttaaaaactctggtttgccttaccacc 759
|| ||| || || || |||||||||||||||||| | ||||||| || |||| |||| |
Sbjct: 4437 tg-cgtttgttcttgttatttttcttttctacttt-agaactctgcttcgcctcacca-c 4381
Query: 760 ccagggaatggcaaaattaaaaagttctg 788
||||| || |||||||||||||||||||
Sbjct: 4380 ccaggtgattgcaaaattaaaaagttctg 4352
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7835
Number of Sequences: 1807
Number of extensions: 7835
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)