BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZD06FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1786 1291 0.0
>3x_Contig1786
Length = 33838
Score = 1291 bits (651), Expect = 0.0
Identities = 792/826 (95%), Gaps = 11/826 (1%)
Strand = Plus / Plus
Query: 100 ttataaattgatgtgaaaggagtagaaccttattcttttatatttgattgttgtaaatat 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11872 ttataaattgatgtgaaaggagtagaaccttattcttttatatttgattgttgtaaatat 11931
Query: 160 agtgagaagtttttatcgtataataatatgaaatgctgaaaatataatgttacaagaata 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11932 agtgagaagtttttatcgtataataatatgaaatgctgaaaatataatgttacaagaata 11991
Query: 220 gaacaaacaaaacaatgcaaggttgattatgggtcttgggtccatttccatgtaccagta 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11992 gaacaaacaaaacaatgcaaggttgattatgggtcttgggtccatttccatgtaccagta 12051
Query: 280 aatgcatgatgcacatatccctttttaaa-gtccgtagtatgtagagaattgaagaaatg 338
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 12052 aatgcatgatgcacatatccctttttaaaagtccgtagtatgtagagaattgaagaaatg 12111
Query: 339 cttcggtaaaagtgctacatctccgtaaagcaaagggtattcgagtagagtgaaattttc 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12112 cttcggtaaaagtgctacatctccgtaaagcaaagggtattcgagtagagtgaaattttc 12171
Query: 399 ccatccaacaggtgacgtgggcaacttgattccaagcaaattatctcctaggggataatt 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12172 ccatccaacaggtgacgtgggcaacttgattccaagcaaattatctcctaggggataatt 12231
Query: 459 ctcgagttttgaaattaaatctaacggtttgttgggatccagaacacacatatgtttgtt 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12232 ctcgagttttgaaattaaatctaacggtttgttgggatccagaacacacatatgtttgtt 12291
Query: 519 attgcagagaacctcgttgcttgaaccctgaatatgatcactgaagttttcgatgtacca 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12292 attgcagagaacctcgttgcttgaaccctgaatatgatcactgaagttttcgatgtacca 12351
Query: 579 ctggttaatagttcggaaaaagctatctgtgattgatgccggaccattccattctatgat 638
|||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||
Sbjct: 12352 ctggttaatagttcggaaaaagctatctgtgaatgaggccggaccagtccattctatgat 12411
Query: 639 accctcataccaa-tagcagaatccttcgacatgttataagcaggttgaacgtcgaaaaa 697
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 12412 accctcataccaattagcagaatccttcgacatgttataggcaggttgaacgtcgaaaag 12471
Query: 698 gttcttgttacccattggggaaagtc-atacgtttgtgggatggatcattattattacaa 756
|||||||| ||||||| ||||||||| ||||||| || |||||||||| || || |||||
Sbjct: 12472 gttcttgtaacccatt-gggaaagtcaatacgttggt-ggatggatca-tagtaatacaa 12528
Query: 757 tgcaagatcagctattctttgtcacgacatttaccaacaatggatggacctggtctactc 816
|||||||||||||| |||||| ||||||| ||| |||||||||| ||||||||||||||
Sbjct: 12529 tgcaagatcagcta-tctttgcaacgacatctacaaacaatggat-gacctggtctactc 12586
Query: 817 gctaaagtccattgacataggtttatccttttattgaaaagccctttc--agtaccaata 874
|||||||||||||||||||||||||||||| |||||||||| ||| || |||||||| |
Sbjct: 12587 gctaaagtccattgacataggtttatccttctattgaaaaggcctctccaagtaccaaga 12646
Query: 875 ttccggtctttctttataccatttatgacaccaac-tcagtcttgg 919
| ||| |||| || ||||||| |||||||||| || ||||||||||
Sbjct: 12647 tcccgttcttcctctataccaattatgacaccgacatcagtcttgg 12692
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6743
Number of Sequences: 1807
Number of extensions: 6743
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)