BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZD06RM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig211 718 0.0
3x_Contig1292 482 e-136
>3x_Contig211
Length = 1325
Score = 718 bits (362), Expect = 0.0
Identities = 418/432 (96%), Gaps = 4/432 (0%)
Strand = Plus / Plus
Query: 284 ggatacactttgagtttagaaatgctaccaagaaattaagaggaatgaagaagcattact 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggatacactttgagtttagaaatgctaccaagaaattaagaggaatgaagaagcattact 60
Query: 344 tatagatgaaattgatacattgtaattctttctccttttcgctcgaatgctggacgtttt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tatagatgaaattgatacattgtaattctttctccttttcgctcgaatgctggacgtttt 120
Query: 404 tcctgtcttatggtcgtataaaatgtaatcgaaatttaatgagtatacttgatattaaca 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcctgtcttatggtcgtataaaatgtaatcgaaatttaatgagtatacttgatattaaca 180
Query: 464 ataaataagtgttgcaaaatgcatattaaaactccagaagagcctatttgttacagaatt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ataaataagtgttgcaaaatgcatattaaaactccagaagagcctatttgttacagaatt 240
Query: 524 tcaaacggaaacattatgccgctgaacgacgtagagtaccgatgtagttaattgcagaac 583
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccaaacggaaacattatgccgctgaacgacgtagagtaccgatgtagttaattgcagaac 300
Query: 584 ctgcctttgagaattcaactgggtcctngnacatgggatgttttagtctt-atgatgaat 642
||||||| ||||||||||| |||||| | |||||| ||| ||||||||| |||||||||
Sbjct: 301 ctgccttgaagaattcaacttggtccttggacatggtatg-tttagtcttaatgatgaat 359
Query: 643 gattcaccggaacgtttcgttacttttacgttcaaagtaccctccattgtcaccattact 702
|||||||||||||||||||||||||| |||| ||||||| ||||||||||||||| ||||
Sbjct: 360 gattcaccggaacgtttcgttactttaacgtccaaagta-cctccattgtcacca-tact 417
Query: 703 tagcattcatgt 714
||||| ||||||
Sbjct: 418 tagcaatcatgt 429
>3x_Contig1292
Length = 8594
Score = 482 bits (243), Expect = e-136
Identities = 266/271 (98%), Gaps = 2/271 (0%)
Strand = Plus / Plus
Query: 43 gcttatcaacatcgacaaatatttcaagatcatgaacaccgtatccatgatgcaattttt 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8294 gcttatcaacatcgacaaatatttcaagatcatgaacaccgtatccatgatgcaattttt 8353
Query: 103 ccaagttggctatgatcttgaaaataaacataatccatcaaaaaaaagggactctttctt 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8354 ccaagttggctatgatcttgaaaataaacataatccatcaaaaaaaagggactctttctt 8413
Query: 163 cagtttaaccggcaccatcgatattgactcaaagagtatcaagccagttgcagagctaca 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8414 cagtttaaccggcaccatcgatattgactcaaagagtatcaagccagttgcagagctaca 8473
Query: 223 agagtttatccttttcgaattttggagaacgaatacgttatatgtaaaagattcggatag 282
||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||
Sbjct: 8474 agagtttatccttttcgaattttggtgtacgaatacgttatatgtaaaagcttcggatag 8533
Query: 283 aggatacactttgagtttagaaatgctacca 313
|||||||| ||||||||||| ||||||||||
Sbjct: 8534 aggataca-tttgagtttag-aatgctacca 8562
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8429
Number of Sequences: 1807
Number of extensions: 8429
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 2
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)